Variant report

Variant	rs3130387
Chromosome Location	chr6:30187887-30187888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30185779..30188163-chr6:30312459..30314446,2	MCF-7	breast:
2	chr6:30187236..30189646-chr6:30189831..30192507,2	K562	blood:
3	chr6:30032989..30035787-chr6:30185731..30187917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241370	Chromatin interaction
ENSG00000204619	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1573295	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2074472	0.87[ASN][1000 genomes]
rs2097772	0.86[ASN][1000 genomes]
rs2106070	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2106071	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2107196	0.81[ASN][1000 genomes]
rs2158283	0.85[ASN][1000 genomes]
rs2284164	0.83[ASN][1000 genomes]
rs2285801	0.80[ASN][1000 genomes]
rs2394737	0.81[ASN][1000 genomes]
rs2508029	0.83[ASN][1000 genomes]
rs2844782	0.83[ASN][1000 genomes]
rs2844786	0.83[ASN][1000 genomes]
rs3094131	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3094132	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3094139	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3094140	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3094614	0.86[ASN][1000 genomes]
rs3094615	0.84[ASN][1000 genomes]
rs3130381	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3130382	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3130383	0.85[ASN][1000 genomes]
rs3130384	0.85[ASN][1000 genomes]
rs3130386	0.85[ASN][1000 genomes]
rs3130388	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3130389	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3130391	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3130393	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3130394	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3132665	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3132668	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3132669	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3132671	0.86[ASN][1000 genomes]
rs3132672	0.85[ASN][1000 genomes]
rs3132673	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3132674	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6457164	0.81[ASN][1000 genomes]
rs6457165	0.81[ASN][1000 genomes]
rs6457167	0.81[ASN][1000 genomes]
rs718254	0.82[ASN][1000 genomes]
rs7382110	0.80[ASN][1000 genomes]
rs7383511	0.90[ASN][1000 genomes]
rs757257	0.85[ASN][1000 genomes]
rs765977	0.82[ASN][1000 genomes]
rs7763162	0.85[ASN][1000 genomes]
rs7764012	0.84[ASN][1000 genomes]
rs7774730	0.81[ASN][1000 genomes]
rs885914	0.86[ASN][1000 genomes]
rs885915	0.89[ASN][1000 genomes]
rs916568	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs916571	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs916572	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9261539	0.81[ASN][1000 genomes]
rs9261543	0.81[ASN][1000 genomes]
rs9261546	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30182600-30189200	Weak transcription	Right Atrium	heart
2	chr6:30185400-30190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:30187400-30188400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:30187400-30191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:30187800-30189400	Weak transcription	HepG2	liver

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