Variant report

Variant	rs2844778
Chromosome Location	chr6:30205991-30205992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:30205940-30206090	GM12864	blood:	n/a	n/a
2	CTCF	chr6:30205815-30206765	A549	lung:	n/a	n/a
3	CTCF	chr6:30205940-30206090	GM06990	blood:	n/a	n/a
4	CTCF	chr6:30205880-30206030	GM12865	blood:	n/a	n/a

Variant related genes	Relation type
TRIM26BP	TF binding region
HCG17	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1362089	0.92[ASN][1000 genomes]
rs1573295	0.88[ASN][1000 genomes]
rs2021366	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074472	0.80[EUR][1000 genomes]
rs2106070	0.86[ASN][1000 genomes]
rs2106071	0.82[ASN][1000 genomes]
rs2158283	0.82[ASN][1000 genomes]
rs2253163	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253164	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2284164	0.84[ASN][1000 genomes]
rs2285801	0.93[ASN][1000 genomes]
rs2394737	0.83[ASN][1000 genomes]
rs2428505	0.87[ASN][1000 genomes]
rs2516723	0.87[ASN][1000 genomes]
rs2844767	0.87[ASN][1000 genomes]
rs2844768	0.83[ASN][1000 genomes]
rs3094131	0.88[ASN][1000 genomes]
rs3094132	0.88[ASN][1000 genomes]
rs3094139	0.84[ASN][1000 genomes]
rs3094140	0.88[ASN][1000 genomes]
rs3094614	0.86[ASN][1000 genomes]
rs3094615	0.83[ASN][1000 genomes]
rs3094637	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3094638	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3094639	0.97[ASN][1000 genomes]
rs3129694	0.94[ASN][1000 genomes]
rs3130381	0.86[ASN][1000 genomes]
rs3130382	0.83[ASN][1000 genomes]
rs3130383	0.86[ASN][1000 genomes]
rs3130384	0.86[ASN][1000 genomes]
rs3130386	0.86[ASN][1000 genomes]
rs3130388	0.88[ASN][1000 genomes]
rs3130389	0.84[ASN][1000 genomes]
rs3130391	0.88[ASN][1000 genomes]
rs3130393	0.87[ASN][1000 genomes]
rs3132660	0.86[ASN][1000 genomes]
rs3132665	0.86[ASN][1000 genomes]
rs3132668	0.87[ASN][1000 genomes]
rs3132669	0.86[ASN][1000 genomes]
rs3132671	0.86[ASN][1000 genomes]
rs3132672	0.86[ASN][1000 genomes]
rs3132673	0.85[ASN][1000 genomes]
rs3132674	0.85[ASN][1000 genomes]
rs35848695	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4959046	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457164	0.83[ASN][1000 genomes]
rs6457165	0.83[ASN][1000 genomes]
rs6457167	0.83[ASN][1000 genomes]
rs718254	0.83[ASN][1000 genomes]
rs7383511	0.80[ASN][1000 genomes]
rs765977	0.83[ASN][1000 genomes]
rs7774730	0.83[ASN][1000 genomes]
rs885914	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs885915	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs916568	0.88[ASN][1000 genomes]
rs916571	0.84[ASN][1000 genomes]
rs916572	0.84[ASN][1000 genomes]
rs9261539	0.83[ASN][1000 genomes]
rs9261543	0.83[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30205600-30213000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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