Variant report
| Variant | rs2288045 |
|---|---|
| Chromosome Location | chr16:71335651-71335652 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CALB2-2 | chr16:71335486-71335698 | ENSG00000261260.1 |
| 2 | lnc-CALB2-2 | chr16:71335486-71335698 | NONHSAT143460 |
| 3 | lnc-CALB2-2 | chr16:71335486-71335698 | NONHSAT143461 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10083751 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12925766 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3094447 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3094448 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3094451 | 0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3094458 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3096372 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3096373 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3096375 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3096378 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3096380 | 0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3114640 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3114642 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4238976 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4558424 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4627358 | 0.84[ASN][1000 genomes] |
| rs8052756 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8057396 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv482374 | chr16:71228600-71401617 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1062426 | chr16:71307180-71423400 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv528229 | chr16:71331728-71358937 | Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
