Variant report

Variant	rs8057396
Chromosome Location	chr16:71343929-71343930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71322082..71324513-chr16:71342713..71345948,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180917	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10083751	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12925766	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288045	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2288047	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3094447	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094448	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094451	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3094454	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs3094458	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3096372	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3096373	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3096375	0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3096378	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3096380	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3114640	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3114642	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4238976	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4558424	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4627358	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8052756	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv528229	chr16:71331728-71358937	Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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