Variant report

Variant	rs3096372
Chromosome Location	chr16:71288689-71288690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71287182..71289773-chr16:71380797..71383659,2	MCF-7	breast:
2	chr16:71288537..71290996-chr16:71299715..71301664,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10083751	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12925766	0.96[EUR][1000 genomes]
rs2288045	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs3094447	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3094448	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3094451	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs3094458	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3096373	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3096375	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3096378	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3096380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3114640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3114642	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4558424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8048483	0.81[ASW][hapmap]
rs8052756	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8057396	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758429	chr16:70807122-71316983	Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv2758653	chr16:70807122-71316983	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1860	chr16:71269156-71313852	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71279400-71289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:71279600-71288800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:71283600-71288800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:71283800-71288800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr16:71283800-71289000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr16:71285000-71289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:71285400-71289200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr16:71285600-71289200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr16:71287800-71289000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr16:71288000-71291000	Enhancers	Fetal Muscle Leg	muscle
11	chr16:71288200-71289000	Enhancers	Primary T cells from cord blood	blood
12	chr16:71288200-71290200	Enhancers	Fetal Brain Male	brain
13	chr16:71288200-71290400	Enhancers	Brain Germinal Matrix	brain
14	chr16:71288400-71288800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr16:71288400-71289600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr16:71288400-71289600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr16:71288400-71290000	Enhancers	Primary B cells from cord blood	blood
18	chr16:71288400-71290400	Enhancers	Fetal Brain Female	brain
19	chr16:71288600-71288800	Enhancers	GM12878-XiMat	blood
20	chr16:71288600-71289400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr16:71288600-71289600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr16:71288600-71289800	Enhancers	Fetal Lung	lung
23	chr16:71288600-71290000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr16:71288600-71290000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr16:71288600-71290200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr16:71288600-71290200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr16:71288600-71290200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr16:71288600-71290200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr16:71288600-71290800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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