Variant report

Variant	rs2290822
Chromosome Location	chr3:48473204-48473205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr3:48473061-48473502	HepG2	liver:	n/a	chr3:48473272-48473283
2	TEAD4	chr3:48472532-48473597	HepG2	liver:	n/a	chr3:48472839-48472848 chr3:48472541-48472550
3	NFIC	chr3:48472726-48473453	HepG2	liver:	n/a	chr3:48473409-48473437
4	CREB1	chr3:48469743-48473462	HepG2	liver:	n/a	n/a
5	CTCF	chr3:48473200-48473350	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:48466636-48473218	HepG2	liver:	n/a	n/a
7	NFIC	chr3:48472618-48473456	HepG2	liver:	n/a	chr3:48473409-48473437
8	HDAC2	chr3:48472594-48473212	HepG2	liver:	n/a	chr3:48472899-48472908 chr3:48472941-48472949
9	MXI1	chr3:48472780-48473371	HepG2	liver:	n/a	n/a
10	RCOR1	chr3:48472863-48473323	HepG2	liver:	n/a	n/a
11	ZEB1	chr3:48469774-48473492	HepG2	liver:	n/a	chr3:48471157-48471164 chr3:48471410-48471422
12	POLR2A	chr3:48470994-48473326	HepG2	liver:	n/a	n/a
13	ELF1	chr3:48472734-48473400	HepG2	liver:	n/a	chr3:48473272-48473283
14	SP1	chr3:48472639-48473224	HepG2	liver:	n/a	chr3:48473114-48473123 chr3:48473014-48473023
15	HNF4G	chr3:48472610-48473252	HepG2	liver:	n/a	chr3:48472943-48472955 chr3:48472939-48472957 chr3:48472941-48472954 chr3:48472937-48472959 chr3:48472942-48472954 chr3:48472942-48472954 chr3:48472941-48472954 chr3:48472941-48472955 chr3:48472942-48472955 chr3:48472941-48472954 chr3:48472942-48472954 chr3:48472939-48472951 chr3:48472942-48472954
16	FOXA1	chr3:48472565-48473209	HepG2	liver:	n/a	n/a
17	HDAC2	chr3:48472633-48473251	HepG2	liver:	n/a	chr3:48472899-48472908 chr3:48472941-48472949
18	NR2F2	chr3:48472577-48473349	HepG2	liver:	n/a	n/a
19	NR2F2	chr3:48469324-48473447	HepG2	liver:	n/a	n/a
20	FOXA2	chr3:48472145-48473335	HepG2	liver:	n/a	n/a
21	MAZ	chr3:48472533-48473396	HepG2	liver:	n/a	chr3:48473015-48473025

No.	Distal block	Cell Line	Cell type
1	chr3:48340975..48343990-chr3:48471746..48476834,5	MCF-7	breast:
2	chr3:48468825..48473989-chr3:48477233..48479904,8	MCF-7	breast:
3	chr3:48438455..48441230-chr3:48472169..48474219,2	MCF-7	breast:
4	chr3:48263892..48266561-chr3:48472281..48474384,2	MCF-7	breast:
5	chr3:48308151..48311606-chr3:48472406..48476834,4	MCF-7	breast:
6	chr3:48470951..48473880-chr3:48506965..48509988,4	MCF-7	breast:
7	chr3:48472201..48473721-chr3:48483082..48485224,2	MCF-7	breast:
8	chr3:48464457..48466240-chr3:48471640..48473248,2	K562	blood:

Variant related genes	Relation type
PLXNB1	TF binding region
ENSG00000164051	Chromatin interaction
ENSG00000164050	Chromatin interaction
ENSG00000164047	Chromatin interaction
ENSG00000213689	Chromatin interaction
ENSG00000172113	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1037773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10470686	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1109227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130170	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11712561	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11797	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12487542	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13069724	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13071337	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13072012	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076076	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13091785	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13314659	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13324374	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1459242	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs1459249	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1459250	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1563736	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1824363	0.96[ASN][1000 genomes]
rs1870444	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1975844	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2045554	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242150	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2362450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2362452	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs28824259	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2885509	0.92[EUR][1000 genomes]
rs2885510	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs3214041	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34761139	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35215722	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3774808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4490383	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858793	0.92[EUR][1000 genomes]
rs4858795	0.84[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap]
rs4858817	0.92[EUR][1000 genomes]
rs4858819	0.90[JPT][hapmap]
rs56298324	0.82[EUR][1000 genomes]
rs60512868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6442116	0.91[EUR][1000 genomes]
rs6442117	0.89[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs6442118	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6442119	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6442120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6442123	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442124	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6764415	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6770470	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6776700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6779262	0.92[EUR][1000 genomes]
rs6784322	0.95[EUR][1000 genomes]
rs6784541	0.95[EUR][1000 genomes]
rs6794875	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6796491	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6800475	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6804774	0.97[EUR][1000 genomes]
rs6810060	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7126	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs725309	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs725310	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs730566	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs73074358	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs734071	0.84[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs7618883	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630741	0.93[EUR][1000 genomes]
rs7634377	0.95[EUR][1000 genomes]
rs7635522	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7636044	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7636782	0.94[EUR][1000 genomes]
rs7639743	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7651407	1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap]
rs7653691	0.93[EUR][1000 genomes]
rs898225	1.00[CEU][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs922075	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9311423	0.95[EUR][1000 genomes]
rs9311424	0.95[EUR][1000 genomes]
rs9311428	0.84[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap]
rs9809843	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9812647	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9815103	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9817615	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826195	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9826247	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9838618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9849509	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9862575	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9864371	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9864815	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9875280	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9876781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9876891	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881491	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9883759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9883927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv834684	chr3:48385699-48589323	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv590242	chr3:48433635-48556339	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv876761	chr3:48464968-48496758	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs2290822	ZNF589	cis	cerebellum	SCAN
rs2290822	C3orf18	cis	cerebellum	SCAN
rs2290822	ALAS1	cis	parietal	SCAN
rs2290822	AMT	cis	parietal	SCAN
rs2290822	SBK1	trans	cerebellum	SCAN
rs2290822	TREX1	Cis_1M	lymphoblastoid	RTeQTL
rs2290822	ZNF589	cis	parietal	SCAN
rs2290822	TMA7	cis	Muscle Skeletal	GTEx
rs2290822	DALRD3	cis	parietal	SCAN
rs2290822	CXCR6	cis	parietal	SCAN
rs2290822	NME6	cis	cerebellum	SCAN
rs2290822	RP11-24C3.2	cis	Muscle Skeletal	GTEx
rs2290822	PLXNB1	cis	multi-tissue	Pritchard
rs2290822	AMT	cis	cerebellum	SCAN
rs2290822	PLXNB1	cis	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48471600-48473400	Flanking Active TSS	HepG2	liver
2	chr3:48471800-48473400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:48471800-48473600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:48471800-48473600	Weak transcription	HSMMtube	muscle
5	chr3:48471800-48473800	Weak transcription	Aorta	Aorta
6	chr3:48471800-48473800	Weak transcription	HSMM	muscle
7	chr3:48471800-48474000	Weak transcription	Left Ventricle	heart
8	chr3:48471800-48474600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:48471800-48476000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:48471800-48477800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:48471800-48480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:48472000-48473400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:48472000-48473400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:48472000-48473400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:48472000-48473400	Enhancers	Duodenum Mucosa	Duodenum
16	chr3:48472000-48473400	Enhancers	Fetal Intestine Large	intestine
17	chr3:48472000-48473600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:48472000-48473600	Weak transcription	GM12878-XiMat	blood
19	chr3:48472000-48473600	Enhancers	HMEC	breast
20	chr3:48472000-48473600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:48472000-48473800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:48472000-48474400	Weak transcription	Primary B cells from cord blood	blood
23	chr3:48472000-48474600	Genic enhancers	Fetal Intestine Small	intestine
24	chr3:48472000-48474600	Weak transcription	NH-A	brain
25	chr3:48472000-48475800	Weak transcription	Small Intestine	intestine
26	chr3:48472000-48476800	Enhancers	Stomach Mucosa	stomach
27	chr3:48472000-48477200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr3:48472000-48477200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:48472000-48477400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:48472000-48477600	Weak transcription	HUVEC	blood vessel
31	chr3:48472000-48480600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:48472000-48481000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:48472200-48473400	Weak transcription	Brain Anterior Caudate	brain
34	chr3:48472200-48473600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:48472200-48473600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:48472200-48473600	Weak transcription	Adipose Nuclei	Adipose
37	chr3:48472200-48473600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:48472200-48473800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:48472200-48473800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr3:48472200-48473800	Weak transcription	Brain Angular Gyrus	brain
41	chr3:48472200-48473800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:48472200-48473800	Weak transcription	Right Ventricle	heart
43	chr3:48472200-48473800	Weak transcription	K562	blood
44	chr3:48472200-48473800	Weak transcription	NHDF-Ad	bronchial
45	chr3:48472200-48474600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:48472200-48475000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:48472200-48475600	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:48472200-48476400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:48472200-48476600	Strong transcription	Fetal Stomach	stomach
50	chr3:48472200-48477000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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