Variant report

Variant	rs2292071
Chromosome Location	chr15:82444663-82444664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82440975..82444665-chr15:82449523..82452349,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1128431	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11852244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11853682	0.81[ASN][1000 genomes]
rs11854157	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs11855145	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11856561	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs16973420	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973451	0.88[ASN][1000 genomes]
rs16973453	0.86[ASN][1000 genomes]
rs17354842	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs28529095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28675984	0.88[ASN][1000 genomes]
rs28752301	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3973890	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4725	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4778983	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs55914836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56394250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57014042	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs60855901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61203524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495644	0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs66672254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66701409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66904072	0.81[ASN][1000 genomes]
rs67988426	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71156029	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7162177	0.84[ASN][1000 genomes]
rs73451393	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8023960	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs8028284	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.80[MKK][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs8032033	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs8034586	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8040160	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8042665	0.84[ASN][1000 genomes]
rs9920827	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
4	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:82420400-82458400	Weak transcription	HepG2	liver
7	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:82430400-82452400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:82431200-82448200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:82431200-82450000	Weak transcription	GM12878-XiMat	blood
14	chr15:82431200-82452400	Weak transcription	Esophagus	oesophagus
15	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
17	chr15:82432600-82445400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:82432600-82454800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:82432600-82454800	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
21	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:82433400-82453800	Weak transcription	Stomach Mucosa	stomach
24	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
25	chr15:82434600-82444800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:82438400-82456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:82439400-82455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:82439800-82451200	Weak transcription	NH-A	brain
29	chr15:82439800-82454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:82439800-82465600	Weak transcription	K562	blood
31	chr15:82440200-82444800	Strong transcription	Primary B cells from cord blood	blood
32	chr15:82440200-82445400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:82440400-82452000	Weak transcription	Osteobl	bone
34	chr15:82440400-82455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
36	chr15:82440600-82444800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr15:82440800-82445400	Strong transcription	HSMM	muscle
38	chr15:82440800-82452200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:82440800-82453000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
41	chr15:82441800-82444800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:82441800-82445200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:82441800-82445600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr15:82442000-82445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:82442200-82444800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:82442400-82444800	Strong transcription	Primary T cells from cord blood	blood
47	chr15:82442400-82445000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:82442800-82444800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:82442800-82444800	Strong transcription	NHEK	skin
50	chr15:82442800-82445200	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links