Variant report

Variant	rs66701409
Chromosome Location	chr15:82472289-82472290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82471168..82473775-chr15:82477385..82479321,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1128431	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852244	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853682	0.83[ASN][1000 genomes]
rs11855145	0.88[ASN][1000 genomes]
rs11856561	0.86[ASN][1000 genomes]
rs16973420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16973451	0.90[ASN][1000 genomes]
rs16973453	0.88[ASN][1000 genomes]
rs17354842	0.86[ASN][1000 genomes]
rs2292071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28529095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28539162	0.80[ASN][1000 genomes]
rs28675984	0.90[ASN][1000 genomes]
rs28752301	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4725	0.88[ASN][1000 genomes]
rs55914836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56394250	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57014042	0.94[ASN][1000 genomes]
rs60855901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61203524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495644	0.86[ASN][1000 genomes]
rs66672254	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67988426	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71156029	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7162177	0.86[ASN][1000 genomes]
rs73451393	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8023960	0.81[ASN][1000 genomes]
rs8028284	0.84[ASN][1000 genomes]
rs8032033	0.86[ASN][1000 genomes]
rs8034586	0.89[ASN][1000 genomes]
rs8040160	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8042665	0.86[ASN][1000 genomes]
rs9920827	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:82444600-82495800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:82455400-82475200	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:82455400-82475200	Weak transcription	Pancreas	Pancrea
6	chr15:82455600-82475200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:82456000-82475800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:82456000-82475800	Weak transcription	Lung	lung
9	chr15:82456000-82510000	Weak transcription	Thymus	Thymus
10	chr15:82456200-82475200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:82456200-82475600	Weak transcription	Fetal Brain Female	brain
12	chr15:82456400-82473000	Weak transcription	Fetal Intestine Large	intestine
13	chr15:82456400-82474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:82456400-82475200	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:82456400-82475200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:82456400-82475400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:82456400-82475800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr15:82456400-82480600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:82456400-82487000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr15:82456400-82502200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr15:82456400-82502400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:82456400-82502600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:82456400-82502800	Weak transcription	Gastric	stomach
24	chr15:82456400-82505400	Weak transcription	Dnd41	blood
25	chr15:82456400-82505600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:82456400-82505600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:82456600-82474200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr15:82456600-82474400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:82456600-82474400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:82456600-82478600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:82456600-82497400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:82456800-82475200	Weak transcription	Liver	Liver
33	chr15:82456800-82509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:82458200-82504800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:82458600-82475600	Weak transcription	GM12878-XiMat	blood
36	chr15:82458600-82479200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:82458800-82502800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:82460800-82474000	Weak transcription	Adipose Nuclei	Adipose
39	chr15:82460800-82475200	Weak transcription	Primary T cells from cord blood	blood
40	chr15:82462000-82475800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:82462000-82505800	Weak transcription	Primary B cells from cord blood	blood
42	chr15:82464000-82475400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:82464000-82494800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:82464200-82476600	Weak transcription	Hela-S3	cervix
45	chr15:82465000-82510000	Weak transcription	Placenta	Placenta
46	chr15:82465400-82473000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:82467200-82473800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:82467400-82475200	Weak transcription	Brain Substantia Nigra	brain
49	chr15:82469000-82474000	Enhancers	Osteobl	bone
50	chr15:82469600-82475200	Weak transcription	Brain Anterior Caudate	brain

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