Variant report

Variant	rs8034586
Chromosome Location	chr15:82453386-82453387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1128431	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11852244	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11853682	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11854157	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11855145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11856561	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16973420	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16973451	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16973453	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17354842	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292071	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28529095	0.86[ASN][1000 genomes]
rs28539162	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28578791	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28675984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28754625	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28883606	0.81[ASN][1000 genomes]
rs3973890	1.00[JPT][hapmap]
rs4725	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4778983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55914836	0.89[ASN][1000 genomes]
rs56394250	0.83[ASN][1000 genomes]
rs57014042	0.83[ASN][1000 genomes]
rs60855901	0.89[ASN][1000 genomes]
rs61203524	0.88[ASN][1000 genomes]
rs6495644	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66672254	0.87[ASN][1000 genomes]
rs66701409	0.89[ASN][1000 genomes]
rs71156029	0.87[ASN][1000 genomes]
rs7162177	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73451393	0.85[ASN][1000 genomes]
rs8023960	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028284	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs8032033	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8040160	0.85[ASN][1000 genomes]
rs8042665	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9920827	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs8034586	AP3B2	cis	cerebellum	SCAN
rs8034586	FAM154B	cis	lymphoblastoid	seeQTL
rs8034586	FLJ22795///LOC727751	N/A	lymphoblastoid	RTeQTL
rs8034586	RP11-152F13.7	cis	Esophagus Mucosa	GTEx
rs8034586	RP11-152F13.7	cis	Skin Sun Exposed Lower leg	GTEx
rs8034586	RP13-608F4.1	cis	Esophagus Mucosa	GTEx
rs8034586	FAM154B	cis	parietal	SCAN
rs8034586	RP13-608F4.1	cis	Stomach	GTEx
rs8034586	RP11-152F13.3	cis	lung	GTEx
rs8034586	RP11-152F13.3	cis	Skin Sun Exposed Lower leg	GTEx
rs8034586	AP3B2	cis	lung	GTEx
rs8034586	AP3B2	cis	Nerve Tibial	GTEx
rs8034586	RP11-152F13.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
2	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:82420400-82458400	Weak transcription	HepG2	liver
5	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
11	chr15:82432600-82454800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:82432600-82454800	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
14	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:82433400-82453800	Weak transcription	Stomach Mucosa	stomach
17	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
18	chr15:82438400-82456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:82439400-82455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:82439800-82454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:82439800-82465600	Weak transcription	K562	blood
22	chr15:82440400-82455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
24	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
25	chr15:82442800-82454400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:82443000-82454800	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:82443400-82457000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:82444000-82455800	Weak transcription	Fetal Brain Female	brain
29	chr15:82444200-82453600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:82444200-82454400	Weak transcription	Aorta	Aorta
31	chr15:82444200-82454400	Weak transcription	Spleen	Spleen
32	chr15:82444400-82454200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:82444400-82454600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:82444400-82454800	Weak transcription	Brain Angular Gyrus	brain
35	chr15:82444400-82454800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:82444400-82455000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:82444400-82455000	Weak transcription	Right Ventricle	heart
38	chr15:82444400-82465200	Weak transcription	Brain Germinal Matrix	brain
39	chr15:82444600-82453600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:82444600-82454400	Weak transcription	Fetal Muscle Leg	muscle
41	chr15:82444600-82454400	Weak transcription	Fetal Stomach	stomach
42	chr15:82444600-82454400	Weak transcription	Left Ventricle	heart
43	chr15:82444600-82454800	Weak transcription	Brain Anterior Caudate	brain
44	chr15:82444600-82454800	Weak transcription	Brain Substantia Nigra	brain
45	chr15:82444600-82454800	Weak transcription	Ovary	ovary
46	chr15:82444600-82455000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:82444600-82455000	Weak transcription	Placenta	Placenta
48	chr15:82444600-82455000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:82444600-82455200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:82444600-82456600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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