Variant report

Variant	rs2293361
Chromosome Location	chr2:54114864-54114865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10185375	0.85[CEU][hapmap]
rs10432674	0.86[ASN][1000 genomes]
rs12162342	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12162343	0.93[ASN][1000 genomes]
rs12614854	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12620383	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12621635	0.82[TSI][hapmap]
rs12621783	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12623273	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12623380	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13426329	0.81[JPT][hapmap]
rs1547980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17045337	0.92[ASN][1000 genomes]
rs17045370	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17045386	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17045435	0.87[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes]
rs2068017	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs2287344	0.82[TSI][hapmap]
rs28396307	0.91[ASN][1000 genomes]
rs3213775	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731972	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3731973	0.95[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs3770389	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3770401	0.82[TSI][hapmap]
rs3821078	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3850347	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6713523	0.89[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs6720298	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72799239	0.87[ASN][1000 genomes]
rs72799248	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799250	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799257	0.94[ASN][1000 genomes]
rs72799259	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72799262	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72799268	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7580916	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805371	0.87[ASN][1000 genomes]
rs9309252	0.84[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087400-54117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:54087400-54137600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:54087600-54116600	Weak transcription	Pancreas	Pancrea
6	chr2:54087600-54117000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
8	chr2:54088400-54137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:54088600-54138000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr2:54089800-54136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:54090200-54137800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:54090200-54138200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:54090400-54137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:54090800-54137400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr2:54091000-54137000	Strong transcription	Fetal Thymus	thymus
16	chr2:54091000-54137800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:54091000-54138000	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr2:54091200-54138000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:54091400-54137600	Strong transcription	Liver	Liver
20	chr2:54093800-54124000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:54094000-54137800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:54099200-54137400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:54100400-54137800	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:54100400-54137800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr2:54100400-54140200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:54100600-54123000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr2:54100600-54137400	Strong transcription	Placenta	Placenta
28	chr2:54100600-54137800	Strong transcription	Primary B cells from cord blood	blood
29	chr2:54100600-54141200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:54100800-54138000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr2:54102000-54124400	Weak transcription	Small Intestine	intestine
32	chr2:54102200-54117400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:54103800-54129200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:54104600-54135600	Strong transcription	Primary T cells from cord blood	blood
35	chr2:54105800-54120400	Strong transcription	Fetal Intestine Large	intestine
36	chr2:54105800-54137200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr2:54106000-54120400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:54106000-54138000	Strong transcription	Dnd41	blood
39	chr2:54106200-54138400	Strong transcription	Adipose Nuclei	Adipose
40	chr2:54106600-54137800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr2:54107000-54123800	Strong transcription	HMEC	breast
42	chr2:54107200-54123000	Strong transcription	K562	blood
43	chr2:54107200-54123200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr2:54107200-54124200	Strong transcription	HepG2	liver
45	chr2:54108200-54115200	Strong transcription	NHEK	skin
46	chr2:54108200-54120400	Strong transcription	Fetal Muscle Leg	muscle
47	chr2:54108200-54137400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:54108400-54135600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:54108400-54137400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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