Variant report

Variant	rs3770389
Chromosome Location	chr2:54083704-54083705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54082442..54083971-chr2:54084751..54087255,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270898	Chromatin interaction
ENSG00000115239	Chromatin interaction
ENSG00000119737	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10432674	0.80[ASN][1000 genomes]
rs12162342	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12162343	0.86[ASN][1000 genomes]
rs12614854	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12618276	0.89[EUR][1000 genomes]
rs12618587	0.80[EUR][1000 genomes]
rs12620190	0.80[EUR][1000 genomes]
rs12620208	0.80[EUR][1000 genomes]
rs12620383	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12621783	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12623273	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12623380	0.94[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1547980	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17045292	0.87[EUR][1000 genomes]
rs17045337	0.92[ASN][1000 genomes]
rs17045370	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17045386	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17045435	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2068017	0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2272249	1.00[YRI][hapmap]
rs2287345	0.80[EUR][1000 genomes]
rs2293361	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28396307	0.91[ASN][1000 genomes]
rs3213775	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3731972	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3731973	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs3821078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3850347	0.87[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6713523	0.94[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6720298	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72799229	0.80[EUR][1000 genomes]
rs72799234	0.80[EUR][1000 genomes]
rs72799236	0.85[EUR][1000 genomes]
rs72799239	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72799248	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72799250	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72799257	0.87[ASN][1000 genomes]
rs72799259	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72799262	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72799268	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7580916	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7600276	0.87[EUR][1000 genomes]
rs805371	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54025800-54085600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:54074800-54096600	Weak transcription	Hela-S3	cervix
3	chr2:54075000-54084000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:54077000-54085800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:54078600-54086800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:54078600-54092200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:54078800-54092400	Weak transcription	K562	blood
8	chr2:54079000-54091800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:54079200-54086800	Weak transcription	Colonic Mucosa	Colon
10	chr2:54079400-54086200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:54079600-54086400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:54079600-54090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:54080000-54083800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:54080000-54083800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:54080000-54083800	Strong transcription	Dnd41	blood
16	chr2:54080200-54083800	Strong transcription	Primary B cells from cord blood	blood
17	chr2:54080200-54086800	Weak transcription	Right Atrium	heart
18	chr2:54080400-54086000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:54080600-54083800	Strong transcription	NHEK	skin
20	chr2:54081200-54091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr2:54081600-54086200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:54081600-54086800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:54081600-54087000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:54081600-54090600	Weak transcription	HUVEC	blood vessel
25	chr2:54081600-54091200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:54081600-54091600	Weak transcription	HSMMtube	muscle
27	chr2:54081800-54085400	Weak transcription	Liver	Liver
28	chr2:54081800-54085600	Weak transcription	Fetal Brain Female	brain
29	chr2:54081800-54086200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr2:54081800-54086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:54081800-54086400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:54081800-54086400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:54081800-54086400	Weak transcription	Esophagus	oesophagus
34	chr2:54081800-54086400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:54081800-54086800	Weak transcription	Gastric	stomach
36	chr2:54081800-54086800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:54081800-54086800	Weak transcription	Right Ventricle	heart
38	chr2:54081800-54087000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr2:54081800-54087400	Weak transcription	A549	lung
40	chr2:54081800-54087600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr2:54081800-54087800	Weak transcription	HSMM	muscle
42	chr2:54081800-54090000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr2:54081800-54090200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:54081800-54092200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:54081800-54094400	Weak transcription	Small Intestine	intestine
46	chr2:54082000-54085200	Weak transcription	Brain Germinal Matrix	brain
47	chr2:54082000-54085400	Weak transcription	Fetal Brain Male	brain
48	chr2:54082000-54085800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:54082000-54086200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr2:54082000-54086200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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