The 2.0 version of rSNPBase

Variant report

Variant rs3821078
Chromosome Location chr2:54082968-54082969
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54025800-54085600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr2:54074800-54096600 Weak transcription Hela-S3 cervix
3 chr2:54075000-54084000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr2:54077000-54085800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr2:54078600-54086800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr2:54078600-54092200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr2:54078800-54092400 Weak transcription K562 blood
8 chr2:54079000-54091800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr2:54079200-54086800 Weak transcription Colonic Mucosa Colon
10 chr2:54079400-54086200 Weak transcription Placenta Amnion Placenta Amnion
11 chr2:54079600-54086400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr2:54079600-54090600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr2:54079800-54083400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr2:54080000-54083600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr2:54080000-54083800 Strong transcription Primary hematopoietic stem cells short term culture blood
16 chr2:54080000-54083800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr2:54080000-54083800 Strong transcription Dnd41 blood
18 chr2:54080200-54083400 Strong transcription Primary T cells from cord blood blood
19 chr2:54080200-54083800 Strong transcription Primary B cells from cord blood blood
20 chr2:54080200-54086800 Weak transcription Right Atrium heart
21 chr2:54080400-54083000 Strong transcription Adipose Nuclei Adipose
22 chr2:54080400-54086000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr2:54080600-54083600 Strong transcription Fetal Thymus thymus
24 chr2:54080600-54083800 Strong transcription NHEK skin
25 chr2:54081200-54091800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr2:54081600-54086200 Weak transcription H1 Cell Line embryonic stem cell
27 chr2:54081600-54086800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr2:54081600-54087000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr2:54081600-54090600 Weak transcription HUVEC blood vessel
30 chr2:54081600-54091200 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr2:54081600-54091600 Weak transcription HSMMtube muscle
32 chr2:54081800-54085400 Weak transcription Liver Liver
33 chr2:54081800-54085600 Weak transcription Fetal Brain Female brain
34 chr2:54081800-54086200 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr2:54081800-54086400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr2:54081800-54086400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr2:54081800-54086400 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr2:54081800-54086400 Weak transcription Esophagus oesophagus
39 chr2:54081800-54086400 Weak transcription Fetal Muscle Trunk muscle
40 chr2:54081800-54086800 Weak transcription Gastric stomach
41 chr2:54081800-54086800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr2:54081800-54086800 Weak transcription Right Ventricle heart
43 chr2:54081800-54087000 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr2:54081800-54087400 Weak transcription A549 lung
45 chr2:54081800-54087600 Weak transcription Primary hematopoietic stem cells blood
46 chr2:54081800-54087800 Weak transcription HSMM muscle
47 chr2:54081800-54090000 Weak transcription Primary monocytes fromperipheralblood blood
48 chr2:54081800-54090200 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr2:54081800-54092200 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr2:54081800-54094400 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015