Variant report

Variant	rs17045386
Chromosome Location	chr2:54140575-54140576
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54139388..54141626-chr2:54342749..54345522,2	K562	blood:
2	chr2:54138008..54141282-chr2:54142096..54146757,4	K562	blood:

Variant related genes	Relation type
ENSG00000170634	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10432674	0.89[ASN][1000 genomes]
rs12162342	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12162343	0.93[ASN][1000 genomes]
rs12612589	0.87[CEU][hapmap]
rs12614854	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12618276	0.82[EUR][1000 genomes]
rs12618587	0.82[EUR][1000 genomes]
rs12620190	0.82[EUR][1000 genomes]
rs12620208	0.82[EUR][1000 genomes]
rs12620383	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12621635	0.87[CEU][hapmap]
rs12621783	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12623273	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12623380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547980	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17045215	0.87[CEU][hapmap]
rs17045292	0.84[EUR][1000 genomes]
rs17045337	0.91[ASN][1000 genomes]
rs17045370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17045435	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2068017	0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2272250	0.84[EUR][1000 genomes]
rs2287344	0.87[CEU][hapmap]
rs2287345	0.82[EUR][1000 genomes]
rs2293361	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28396307	0.89[ASN][1000 genomes]
rs3213775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3731972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3731973	0.95[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs3770389	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3821078	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850347	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6713523	0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6720298	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72799229	0.82[EUR][1000 genomes]
rs72799234	0.82[EUR][1000 genomes]
rs72799239	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72799248	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72799250	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72799257	0.97[ASN][1000 genomes]
rs72799259	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72799262	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72799268	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7580916	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7595713	0.87[CEU][hapmap]
rs7600276	0.80[EUR][1000 genomes]
rs805371	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9309252	0.87[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54100600-54141200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:54113200-54144600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:54124400-54159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:54124800-54140800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:54124800-54141000	Strong transcription	Osteobl	bone
12	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:54126800-54141000	Strong transcription	NHDF-Ad	bronchial
14	chr2:54127000-54156000	Weak transcription	Pancreas	Pancrea
15	chr2:54128000-54145400	Weak transcription	Ovary	ovary
16	chr2:54128800-54144600	Weak transcription	Fetal Brain Male	brain
17	chr2:54129000-54157600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:54130400-54146600	Weak transcription	Small Intestine	intestine
19	chr2:54132400-54141200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:54133000-54142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:54133000-54142200	Weak transcription	Fetal Stomach	stomach
22	chr2:54133000-54145400	Weak transcription	Brain Germinal Matrix	brain
23	chr2:54133000-54151800	Weak transcription	Psoas Muscle	Psoas
24	chr2:54133000-54153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:54133000-54157800	Weak transcription	Colonic Mucosa	Colon
26	chr2:54133200-54154800	Weak transcription	Aorta	Aorta
27	chr2:54133400-54145600	Weak transcription	Esophagus	oesophagus
28	chr2:54133400-54150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:54133400-54151800	Weak transcription	Lung	lung
30	chr2:54133400-54154800	Weak transcription	Spleen	Spleen
31	chr2:54133600-54151800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:54133600-54152000	Weak transcription	Right Ventricle	heart
33	chr2:54133800-54145400	Weak transcription	Thymus	Thymus
34	chr2:54135000-54142200	Weak transcription	Fetal Muscle Leg	muscle
35	chr2:54135000-54144600	Weak transcription	Brain Substantia Nigra	brain
36	chr2:54135000-54148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:54135000-54149400	Weak transcription	NHLF	lung
38	chr2:54135200-54142000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr2:54135200-54144600	Weak transcription	Brain Angular Gyrus	brain
40	chr2:54135200-54145200	Weak transcription	Fetal Brain Female	brain
41	chr2:54135200-54146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr2:54135200-54147400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:54135400-54141000	Weak transcription	Brain Anterior Caudate	brain
44	chr2:54135400-54146200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:54135600-54140600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:54135600-54140800	Weak transcription	Primary T cells from cord blood	blood
47	chr2:54135600-54140800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr2:54135600-54140800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr2:54135600-54143000	Weak transcription	Left Ventricle	heart
50	chr2:54135600-54143200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links