Variant report

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1324026	0.82[EUR][1000 genomes]
rs1324027	0.82[EUR][1000 genomes]
rs1324028	0.82[EUR][1000 genomes]
rs1324031	0.83[EUR][1000 genomes]
rs1324035	0.83[EUR][1000 genomes]
rs1324036	0.83[EUR][1000 genomes]
rs1324037	0.80[EUR][1000 genomes]
rs1359212	0.82[EUR][1000 genomes]
rs1408229	0.83[EUR][1000 genomes]
rs1853578	0.83[EUR][1000 genomes]
rs1853579	0.82[EUR][1000 genomes]
rs1853580	0.82[EUR][1000 genomes]
rs1924451	0.83[EUR][1000 genomes]
rs1998568	0.83[EUR][1000 genomes]
rs1998569	0.83[EUR][1000 genomes]
rs1998570	0.83[EUR][1000 genomes]
rs2147180	0.82[EUR][1000 genomes]
rs2147182	0.82[EUR][1000 genomes]
rs2209243	0.83[EUR][1000 genomes]
rs2209244	0.83[EUR][1000 genomes]
rs2224849	0.83[EUR][1000 genomes]
rs2323441	0.83[EUR][1000 genomes]
rs2323445	0.83[EUR][1000 genomes]
rs4245381	0.82[EUR][1000 genomes]
rs4245382	0.83[EUR][1000 genomes]
rs4341644	0.83[EUR][1000 genomes]
rs4359318	0.82[EUR][1000 genomes]
rs4943453	0.82[EUR][1000 genomes]
rs4943455	0.82[EUR][1000 genomes]
rs4943456	0.83[EUR][1000 genomes]
rs4943457	0.83[EUR][1000 genomes]
rs4943459	0.81[EUR][1000 genomes]
rs4943460	0.82[EUR][1000 genomes]
rs4943463	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6563520	0.83[EUR][1000 genomes]
rs9315477	0.83[EUR][1000 genomes]
rs9532019	0.83[EUR][1000 genomes]
rs9532021	0.83[EUR][1000 genomes]
rs9547747	0.82[EUR][1000 genomes]
rs9547748	0.83[EUR][1000 genomes]
rs9547751	0.82[EUR][1000 genomes]
rs9576228	0.85[ASN][1000 genomes]
rs9576231	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37824400-37824800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr13:37824400-37824800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr13:37824400-37824800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:37824400-37824800	Active TSS	H9 Cell Line	embryonic stem cell

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