Variant report

Variant	rs9576228
Chromosome Location	chr13:37819029-37819030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10507446	0.83[EUR][1000 genomes]
rs1324032	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1324033	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17055165	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17055167	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2057533	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2181793	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2323446	0.85[ASN][1000 genomes]
rs4943463	0.93[ASN][1000 genomes]
rs9566196	0.83[EUR][1000 genomes]
rs9566199	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9576221	0.83[EUR][1000 genomes]
rs9576222	0.83[EUR][1000 genomes]
rs9576223	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9576227	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9576231	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv561493	chr13:37782714-37822869	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37817800-37819400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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