Variant report

Variant	rs9566196
Chromosome Location	chr13:37789957-37789958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10507446	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11147638	0.90[ASN][1000 genomes]
rs1324026	0.96[ASN][1000 genomes]
rs1324027	0.96[ASN][1000 genomes]
rs1324028	0.96[ASN][1000 genomes]
rs1324031	0.96[ASN][1000 genomes]
rs1324032	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324033	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324035	0.93[ASN][1000 genomes]
rs1324036	0.95[ASN][1000 genomes]
rs1324037	0.95[ASN][1000 genomes]
rs1359212	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1408229	0.96[ASN][1000 genomes]
rs17055165	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17055167	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17224133	0.94[ASN][1000 genomes]
rs1853578	0.96[ASN][1000 genomes]
rs1853579	0.96[ASN][1000 genomes]
rs1853580	0.96[ASN][1000 genomes]
rs1924451	0.95[ASN][1000 genomes]
rs1998568	0.96[ASN][1000 genomes]
rs1998569	0.95[ASN][1000 genomes]
rs1998570	0.95[ASN][1000 genomes]
rs2057533	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147180	0.96[ASN][1000 genomes]
rs2147182	0.96[ASN][1000 genomes]
rs2181793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2209243	0.96[ASN][1000 genomes]
rs2209244	0.96[ASN][1000 genomes]
rs2224849	0.96[ASN][1000 genomes]
rs2323441	0.96[ASN][1000 genomes]
rs2323445	0.96[ASN][1000 genomes]
rs4245381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4245382	0.96[ASN][1000 genomes]
rs4341644	0.96[ASN][1000 genomes]
rs4359318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4414353	0.94[ASN][1000 genomes]
rs4943453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4943455	0.96[ASN][1000 genomes]
rs4943456	0.96[ASN][1000 genomes]
rs4943457	0.96[ASN][1000 genomes]
rs4943459	0.95[ASN][1000 genomes]
rs4943460	0.95[ASN][1000 genomes]
rs6563520	0.96[ASN][1000 genomes]
rs8001122	0.95[ASN][1000 genomes]
rs9315474	0.94[ASN][1000 genomes]
rs9315477	0.95[ASN][1000 genomes]
rs9532010	0.90[ASN][1000 genomes]
rs9532011	0.90[ASN][1000 genomes]
rs9532019	0.95[ASN][1000 genomes]
rs9532021	0.95[ASN][1000 genomes]
rs9547741	0.90[ASN][1000 genomes]
rs9547742	0.90[ASN][1000 genomes]
rs9547747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9547748	0.96[ASN][1000 genomes]
rs9547751	0.95[ASN][1000 genomes]
rs9566193	0.94[ASN][1000 genomes]
rs9566194	0.94[ASN][1000 genomes]
rs9566199	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576209	0.94[ASN][1000 genomes]
rs9576210	0.94[ASN][1000 genomes]
rs9576211	0.94[ASN][1000 genomes]
rs9576215	0.92[ASN][1000 genomes]
rs9576218	0.93[ASN][1000 genomes]
rs9576219	0.95[ASN][1000 genomes]
rs9576221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576222	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576223	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576227	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576228	0.83[EUR][1000 genomes]
rs9576231	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv561493	chr13:37782714-37822869	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9566196	STARD13	cis	cerebellum	SCAN
rs9566196	CCNA1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37786000-37790000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr13:37789600-37790000	Enhancers	Placenta	Placenta
3	chr13:37789800-37790400	Enhancers	Fetal Muscle Leg	muscle

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