Variant report

Variant	rs1853578
Chromosome Location	chr13:37801101-37801102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10507446	0.96[ASN][1000 genomes]
rs11147638	0.90[ASN][1000 genomes]
rs1324026	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324027	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324028	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324031	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324032	0.98[ASN][1000 genomes]
rs1324033	0.98[ASN][1000 genomes]
rs1324035	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324036	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1324037	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1359212	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408229	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055062	0.81[EUR][1000 genomes]
rs17055165	0.98[ASN][1000 genomes]
rs17055167	0.98[ASN][1000 genomes]
rs17224133	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853579	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853580	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924451	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998568	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998569	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998570	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2057533	0.98[ASN][1000 genomes]
rs2137588	0.81[EUR][1000 genomes]
rs2137589	0.81[EUR][1000 genomes]
rs2147180	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2147182	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181793	1.00[ASN][1000 genomes]
rs2209243	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209244	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224849	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323441	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323445	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323446	0.83[EUR][1000 genomes]
rs4245381	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245382	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341644	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4359318	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414353	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943453	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943455	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943456	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943457	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943459	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943460	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943463	0.88[EUR][1000 genomes]
rs6563520	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001122	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9315474	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9315476	0.92[EUR][1000 genomes]
rs9315477	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9532010	0.90[ASN][1000 genomes]
rs9532011	0.90[ASN][1000 genomes]
rs9532019	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9532021	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9547741	0.90[ASN][1000 genomes]
rs9547742	0.90[ASN][1000 genomes]
rs9547747	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547748	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547751	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566193	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566194	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566195	0.81[EUR][1000 genomes]
rs9566196	0.96[ASN][1000 genomes]
rs9566199	0.98[ASN][1000 genomes]
rs9576209	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576210	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576211	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576212	0.82[EUR][1000 genomes]
rs9576215	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9576216	0.82[EUR][1000 genomes]
rs9576217	0.82[EUR][1000 genomes]
rs9576218	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9576219	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576221	0.96[ASN][1000 genomes]
rs9576222	0.96[ASN][1000 genomes]
rs9576223	1.00[ASN][1000 genomes]
rs9576227	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv561493	chr13:37782714-37822869	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37798800-37801800	Enhancers	Osteobl	bone
2	chr13:37799600-37801200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:37799600-37801600	Enhancers	HMEC	breast
4	chr13:37799600-37801800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr13:37799600-37801800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:37799800-37801600	Enhancers	NHDF-Ad	bronchial
7	chr13:37800000-37801600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:37800400-37801400	Weak transcription	NHEK	skin
9	chr13:37800400-37801800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:37800400-37804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links