Variant report

Variant	rs4943463
Chromosome Location	chr13:37837820-37837821
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1324026	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1324027	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1324028	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1324031	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1324035	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1324036	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1324037	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1359212	0.87[CEU][hapmap];0.98[GIH][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1408229	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1853578	0.88[EUR][1000 genomes]
rs1853579	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1853580	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1924451	0.88[EUR][1000 genomes]
rs1998568	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1998569	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1998570	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2147180	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2147182	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2209243	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2209244	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2224849	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2323441	0.88[EUR][1000 genomes]
rs2323445	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2323446	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4245381	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4245382	0.88[EUR][1000 genomes]
rs4341644	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4359318	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943453	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943455	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943456	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4943457	0.88[EUR][1000 genomes]
rs4943459	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943460	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6563520	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8001122	0.81[EUR][1000 genomes]
rs9315476	0.83[EUR][1000 genomes]
rs9315477	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9532019	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9532021	0.88[EUR][1000 genomes]
rs9547747	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9547748	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9547751	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9576228	0.93[ASN][1000 genomes]
rs9576231	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37837600-37845400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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