Variant report

Variant	rs9315476
Chromosome Location	chr13:37805073-37805074
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs12716673	0.93[ASN][1000 genomes]
rs12871615	0.95[ASN][1000 genomes]
rs1324026	0.94[EUR][1000 genomes]
rs1324027	0.94[EUR][1000 genomes]
rs1324028	0.94[EUR][1000 genomes]
rs1324031	0.95[EUR][1000 genomes]
rs1324035	0.95[EUR][1000 genomes]
rs1324036	0.95[EUR][1000 genomes]
rs1324037	0.92[EUR][1000 genomes]
rs1359212	0.88[ASW][hapmap];0.87[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs1408229	0.95[EUR][1000 genomes]
rs1591587	0.93[ASN][1000 genomes]
rs17055062	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17224133	0.82[EUR][1000 genomes]
rs1853578	0.92[EUR][1000 genomes]
rs1853579	0.91[EUR][1000 genomes]
rs1853580	0.94[EUR][1000 genomes]
rs1924451	0.95[EUR][1000 genomes]
rs1998568	0.95[EUR][1000 genomes]
rs1998569	0.95[EUR][1000 genomes]
rs1998570	0.95[EUR][1000 genomes]
rs2050567	0.83[JPT][hapmap]
rs2137588	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2137589	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147180	0.94[EUR][1000 genomes]
rs2147182	0.94[EUR][1000 genomes]
rs2209243	0.95[EUR][1000 genomes]
rs2209244	0.95[EUR][1000 genomes]
rs2224849	0.95[EUR][1000 genomes]
rs2323441	0.95[EUR][1000 genomes]
rs2323445	0.95[EUR][1000 genomes]
rs4245381	0.94[EUR][1000 genomes]
rs4245382	0.95[EUR][1000 genomes]
rs4341644	0.95[EUR][1000 genomes]
rs4359318	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs4414353	0.82[EUR][1000 genomes]
rs4943445	0.83[JPT][hapmap]
rs4943453	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs4943455	0.94[EUR][1000 genomes]
rs4943456	0.95[EUR][1000 genomes]
rs4943457	0.95[EUR][1000 genomes]
rs4943459	0.93[EUR][1000 genomes]
rs4943460	0.94[EUR][1000 genomes]
rs4943463	0.83[EUR][1000 genomes]
rs6563520	0.95[EUR][1000 genomes]
rs7330721	0.83[JPT][hapmap]
rs7331543	0.83[JPT][hapmap]
rs7332263	0.83[JPT][hapmap]
rs7982863	0.83[JPT][hapmap]
rs8000449	0.98[ASN][1000 genomes]
rs8001049	0.98[ASN][1000 genomes]
rs8001122	0.87[EUR][1000 genomes]
rs9315474	0.82[EUR][1000 genomes]
rs9315477	0.95[EUR][1000 genomes]
rs938216	0.83[JPT][hapmap]
rs9532012	0.92[ASN][1000 genomes]
rs9532015	0.93[ASN][1000 genomes]
rs9532016	0.93[ASN][1000 genomes]
rs9532019	0.95[EUR][1000 genomes]
rs9532021	0.95[EUR][1000 genomes]
rs9547747	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs9547748	0.95[EUR][1000 genomes]
rs9547750	0.95[ASN][1000 genomes]
rs9547751	0.94[EUR][1000 genomes]
rs9547759	0.95[ASN][1000 genomes]
rs9566193	0.82[EUR][1000 genomes]
rs9566194	0.82[EUR][1000 genomes]
rs9566195	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576209	0.82[EUR][1000 genomes]
rs9576210	0.82[EUR][1000 genomes]
rs9576211	0.82[EUR][1000 genomes]
rs9576212	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576215	0.82[EUR][1000 genomes]
rs9576216	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576217	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576218	0.81[EUR][1000 genomes]
rs9576219	0.81[EUR][1000 genomes]
rs9603148	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv561493	chr13:37782714-37822869	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv3416938	chr13:37804771-37805171	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37801800-37814200	Weak transcription	Osteobl	bone
2	chr13:37804400-37809800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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