Variant report

Variant	rs4414353
Chromosome Location	chr13:37775465-37775466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10507446	0.94[ASN][1000 genomes]
rs11147638	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324026	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1324027	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1324028	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1324031	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1324032	0.92[ASN][1000 genomes]
rs1324033	0.92[ASN][1000 genomes]
rs1324035	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1324036	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1324037	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1359212	0.86[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1408229	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17055062	0.96[EUR][1000 genomes]
rs17055165	0.92[ASN][1000 genomes]
rs17055167	0.92[ASN][1000 genomes]
rs17224133	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853578	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853579	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853580	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1924451	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1998568	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998569	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1998570	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2057533	0.92[ASN][1000 genomes]
rs2137588	0.96[EUR][1000 genomes]
rs2137589	0.96[EUR][1000 genomes]
rs2147180	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147182	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2181793	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2209243	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2209244	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2224849	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2323441	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2323445	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245381	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245382	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4341644	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4359318	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943453	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943455	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943456	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943457	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943459	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4943460	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6563520	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001122	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315476	0.82[EUR][1000 genomes]
rs9315477	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532010	0.96[ASN][1000 genomes]
rs9532011	0.96[ASN][1000 genomes]
rs9532019	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532021	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9547741	0.96[ASN][1000 genomes]
rs9547742	0.96[ASN][1000 genomes]
rs9547747	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9547748	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9547751	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9566193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566195	0.96[EUR][1000 genomes]
rs9566196	0.94[ASN][1000 genomes]
rs9566199	0.92[ASN][1000 genomes]
rs9576195	1.00[YRI][hapmap]
rs9576209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576212	0.97[EUR][1000 genomes]
rs9576215	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576216	0.97[EUR][1000 genomes]
rs9576217	0.97[EUR][1000 genomes]
rs9576218	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576219	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576221	0.94[ASN][1000 genomes]
rs9576222	0.94[ASN][1000 genomes]
rs9576223	0.94[ASN][1000 genomes]
rs9576227	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4414353	ZAR1L	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37769400-37775600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:37773200-37775800	Weak transcription	Osteobl	bone
3	chr13:37773200-37783600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:37773400-37776400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:37775200-37776000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:37775200-37776800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:37775400-37775800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:37775400-37776000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr13:37775400-37776000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:37775400-37776000	Enhancers	NHLF	lung
11	chr13:37775400-37776200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:37775400-37776800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:37775400-37776800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:37775400-37777000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:37775400-37777400	Enhancers	NHDF-Ad	bronchial

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