Variant report

Variant	rs4943445
Chromosome Location	chr13:37742451-37742452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:37742336-37742593	Hela-S3	cervix:	n/a	n/a
2	FOS	chr13:37742408-37742608	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr13:37742421-37742648	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RN7SKP1	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11147624	0.93[CHD][hapmap]
rs11147625	0.93[CHD][hapmap]
rs11147626	0.93[CHD][hapmap]
rs11147627	0.93[CHD][hapmap]
rs11616599	0.86[EUR][1000 genomes]
rs1336757	1.00[ASN][1000 genomes]
rs1336758	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336759	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336760	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415073	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591586	0.83[EUR][1000 genomes]
rs17822604	0.83[EUR][1000 genomes]
rs1806525	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832251	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036990	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036991	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858861	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858862	0.83[EUR][1000 genomes]
rs4054538	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4054539	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4054541	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4098253	0.84[EUR][1000 genomes]
rs4098254	0.84[EUR][1000 genomes]
rs4463963	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485227	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519211	0.85[EUR][1000 genomes]
rs4601911	0.84[EUR][1000 genomes]
rs4943446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943448	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61120216	0.84[EUR][1000 genomes]
rs61135832	0.84[EUR][1000 genomes]
rs6563514	0.84[EUR][1000 genomes]
rs6563515	0.84[EUR][1000 genomes]
rs72621290	0.86[EUR][1000 genomes]
rs7317466	1.00[ASN][1000 genomes]
rs7327488	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330353	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7330721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7337345	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7985799	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993874	0.84[EUR][1000 genomes]
rs7994726	0.83[EUR][1000 genomes]
rs7995878	0.83[EUR][1000 genomes]
rs8000468	0.84[EUR][1000 genomes]
rs8002559	1.00[ASN][1000 genomes]
rs883514	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883527	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285112	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315473	0.82[EUR][1000 genomes]
rs938214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532008	1.00[ASN][1000 genomes]
rs9532009	0.99[ASN][1000 genomes]
rs9547733	1.00[ASN][1000 genomes]
rs9547734	1.00[ASN][1000 genomes]
rs9547735	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547736	1.00[ASN][1000 genomes]
rs9547739	1.00[ASN][1000 genomes]
rs9547740	0.99[ASN][1000 genomes]
rs9566178	0.93[CHD][hapmap]
rs9566189	0.85[EUR][1000 genomes]
rs9566190	0.85[EUR][1000 genomes]
rs9566191	0.84[EUR][1000 genomes]
rs9576161	0.81[JPT][hapmap]
rs9576177	0.90[CHD][hapmap]
rs9576194	0.85[EUR][1000 genomes]
rs9576195	0.86[EUR][1000 genomes]
rs9576196	0.84[EUR][1000 genomes]
rs9576197	0.84[EUR][1000 genomes]
rs9576198	0.84[EUR][1000 genomes]
rs9576199	0.84[EUR][1000 genomes]
rs9576200	0.84[EUR][1000 genomes]
rs9576201	0.84[EUR][1000 genomes]
rs9576203	0.84[EUR][1000 genomes]
rs9576204	0.84[EUR][1000 genomes]
rs9603143	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37738600-37743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37739000-37743000	Weak transcription	NHDF-Ad	bronchial
3	chr13:37739800-37747400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:37741000-37743200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:37741400-37745000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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