Variant report

Variant	rs9547740
Chromosome Location	chr13:37765117-37765118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1336757	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336758	0.99[ASN][1000 genomes]
rs1336759	0.99[ASN][1000 genomes]
rs1336760	0.99[ASN][1000 genomes]
rs1415073	0.99[ASN][1000 genomes]
rs1806525	0.99[ASN][1000 genomes]
rs1832251	0.99[ASN][1000 genomes]
rs2036990	0.99[ASN][1000 genomes]
rs2036991	0.99[ASN][1000 genomes]
rs2050567	0.99[ASN][1000 genomes]
rs3858861	0.99[ASN][1000 genomes]
rs4054538	0.93[ASN][1000 genomes]
rs4054539	0.99[ASN][1000 genomes]
rs4054541	0.99[ASN][1000 genomes]
rs4463963	0.99[ASN][1000 genomes]
rs4485227	0.99[ASN][1000 genomes]
rs4943445	0.99[ASN][1000 genomes]
rs4943446	0.99[ASN][1000 genomes]
rs4943447	0.99[ASN][1000 genomes]
rs4943448	0.99[ASN][1000 genomes]
rs7317466	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7327488	0.99[ASN][1000 genomes]
rs7330353	0.98[ASN][1000 genomes]
rs7330721	0.99[ASN][1000 genomes]
rs7331543	0.99[ASN][1000 genomes]
rs7332263	0.99[ASN][1000 genomes]
rs7337345	0.99[ASN][1000 genomes]
rs7982863	0.99[ASN][1000 genomes]
rs7983320	0.86[EUR][1000 genomes]
rs7985799	0.99[ASN][1000 genomes]
rs7996734	0.86[EUR][1000 genomes]
rs8002559	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883514	0.99[ASN][1000 genomes]
rs883527	0.99[ASN][1000 genomes]
rs9285112	0.99[ASN][1000 genomes]
rs938214	0.99[ASN][1000 genomes]
rs938216	0.99[ASN][1000 genomes]
rs938217	0.99[ASN][1000 genomes]
rs9532008	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532009	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532012	0.81[ASN][1000 genomes]
rs9547733	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9547734	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9547735	0.99[ASN][1000 genomes]
rs9547736	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9547739	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566192	0.86[EUR][1000 genomes]
rs9576206	0.86[EUR][1000 genomes]
rs9603143	0.99[ASN][1000 genomes]
rs9788310	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37751800-37766000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37761600-37766400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:37761600-37767000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:37761600-37767000	Weak transcription	HMEC	breast
5	chr13:37761800-37767000	Weak transcription	Muscle Satellite Cultured Cells	--

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