Variant report

Variant	rs9576206
Chromosome Location	chr13:37762105-37762106
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11147624	0.81[CHD][hapmap]
rs11147625	0.81[CHD][hapmap]
rs11147626	0.81[CHD][hapmap]
rs11147627	0.81[CHD][hapmap]
rs11616599	1.00[ASN][1000 genomes]
rs1336757	0.82[EUR][1000 genomes]
rs1359212	0.80[CHB][hapmap]
rs1591586	1.00[ASN][1000 genomes]
rs17822604	0.99[ASN][1000 genomes]
rs3858862	1.00[ASN][1000 genomes]
rs4098253	1.00[ASN][1000 genomes]
rs4098254	1.00[ASN][1000 genomes]
rs4359318	0.86[CHB][hapmap]
rs4519211	0.99[ASN][1000 genomes]
rs4601911	1.00[ASN][1000 genomes]
rs4943445	0.88[CHD][hapmap]
rs4943453	0.80[CHB][hapmap]
rs61120216	1.00[ASN][1000 genomes]
rs61135832	0.99[ASN][1000 genomes]
rs6563514	1.00[ASN][1000 genomes]
rs6563515	1.00[ASN][1000 genomes]
rs72621290	1.00[ASN][1000 genomes]
rs7317466	0.84[EUR][1000 genomes]
rs7983320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7993874	1.00[ASN][1000 genomes]
rs7994726	1.00[ASN][1000 genomes]
rs7995878	1.00[ASN][1000 genomes]
rs7996734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8000468	1.00[ASN][1000 genomes]
rs8002559	0.84[EUR][1000 genomes]
rs9315473	1.00[ASN][1000 genomes]
rs9532008	0.85[EUR][1000 genomes]
rs9532009	0.86[EUR][1000 genomes]
rs9547733	0.81[EUR][1000 genomes]
rs9547734	0.81[EUR][1000 genomes]
rs9547736	0.86[EUR][1000 genomes]
rs9547739	0.86[EUR][1000 genomes]
rs9547740	0.86[EUR][1000 genomes]
rs9566178	0.81[CHD][hapmap]
rs9566189	0.99[ASN][1000 genomes]
rs9566190	1.00[ASN][1000 genomes]
rs9566191	1.00[ASN][1000 genomes]
rs9566192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576177	0.84[CHD][hapmap]
rs9576194	0.99[ASN][1000 genomes]
rs9576195	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9576196	1.00[ASN][1000 genomes]
rs9576197	1.00[ASN][1000 genomes]
rs9576198	1.00[ASN][1000 genomes]
rs9576199	1.00[ASN][1000 genomes]
rs9576200	1.00[ASN][1000 genomes]
rs9576201	1.00[ASN][1000 genomes]
rs9576203	1.00[ASN][1000 genomes]
rs9576204	1.00[ASN][1000 genomes]
rs9788310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9576206	N4BP2L2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37751800-37766000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37761600-37766400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:37761600-37767000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:37761600-37767000	Weak transcription	HMEC	breast
5	chr13:37761800-37767000	Weak transcription	Muscle Satellite Cultured Cells	--

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