Variant report

Variant	rs3858862
Chromosome Location	chr13:37761028-37761029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11616599	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336758	0.82[EUR][1000 genomes]
rs1336759	0.82[EUR][1000 genomes]
rs1336760	0.90[EUR][1000 genomes]
rs1359212	0.80[CHB][hapmap]
rs1415073	0.84[EUR][1000 genomes]
rs1591586	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822604	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806525	0.83[EUR][1000 genomes]
rs1832251	0.83[EUR][1000 genomes]
rs2036990	0.83[EUR][1000 genomes]
rs2036991	0.83[EUR][1000 genomes]
rs2050567	0.83[EUR][1000 genomes]
rs3858861	0.83[EUR][1000 genomes]
rs4054538	0.83[EUR][1000 genomes]
rs4054539	0.83[EUR][1000 genomes]
rs4054541	0.83[EUR][1000 genomes]
rs4098253	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4098254	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4359318	0.80[CHB][hapmap]
rs4485227	0.82[EUR][1000 genomes]
rs4519211	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4601911	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943445	0.83[EUR][1000 genomes]
rs4943446	0.83[EUR][1000 genomes]
rs4943447	0.83[EUR][1000 genomes]
rs4943448	0.83[EUR][1000 genomes]
rs61120216	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61135832	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563514	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563515	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621290	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327488	0.84[EUR][1000 genomes]
rs7330353	0.83[EUR][1000 genomes]
rs7330721	0.82[EUR][1000 genomes]
rs7331543	0.83[EUR][1000 genomes]
rs7332263	0.83[EUR][1000 genomes]
rs7337345	0.83[EUR][1000 genomes]
rs7982863	0.83[EUR][1000 genomes]
rs7983320	0.99[ASN][1000 genomes]
rs7985799	0.83[EUR][1000 genomes]
rs7993874	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995878	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996734	0.97[ASN][1000 genomes]
rs8000468	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883514	0.82[EUR][1000 genomes]
rs883527	0.83[EUR][1000 genomes]
rs9285112	0.85[EUR][1000 genomes]
rs9315473	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938214	0.83[EUR][1000 genomes]
rs938216	0.83[EUR][1000 genomes]
rs938217	0.83[EUR][1000 genomes]
rs9547735	0.84[EUR][1000 genomes]
rs9566189	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566190	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566191	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566192	1.00[ASN][1000 genomes]
rs9576194	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576195	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576196	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576197	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576198	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576199	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576200	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576201	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576203	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576204	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576206	1.00[ASN][1000 genomes]
rs9603143	0.82[EUR][1000 genomes]
rs9788310	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37751800-37766000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37760800-37761600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:37760800-37761600	Enhancers	HMEC	breast
4	chr13:37761000-37761600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:37761000-37761600	Enhancers	NH-A	brain
6	chr13:37761000-37761800	Enhancers	Muscle Satellite Cultured Cells	--

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