Variant report

Variant	rs11616599
Chromosome Location	chr13:37748064-37748065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1336758	0.85[EUR][1000 genomes]
rs1336759	0.85[EUR][1000 genomes]
rs1336760	0.88[EUR][1000 genomes]
rs1415073	0.85[EUR][1000 genomes]
rs1591586	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822604	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806525	0.86[EUR][1000 genomes]
rs1832251	0.86[EUR][1000 genomes]
rs2036990	0.86[EUR][1000 genomes]
rs2036991	0.86[EUR][1000 genomes]
rs2050567	0.86[EUR][1000 genomes]
rs3858861	0.86[EUR][1000 genomes]
rs3858862	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4054538	0.86[EUR][1000 genomes]
rs4054539	0.86[EUR][1000 genomes]
rs4054541	0.86[EUR][1000 genomes]
rs4098253	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4098254	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4359318	0.83[CHB][hapmap]
rs4463963	0.82[EUR][1000 genomes]
rs4485227	0.85[EUR][1000 genomes]
rs4519211	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4601911	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943445	0.86[EUR][1000 genomes]
rs4943446	0.86[EUR][1000 genomes]
rs4943447	0.86[EUR][1000 genomes]
rs4943448	0.86[EUR][1000 genomes]
rs61120216	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61135832	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563514	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563515	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327488	0.85[EUR][1000 genomes]
rs7330353	0.86[EUR][1000 genomes]
rs7330721	0.85[EUR][1000 genomes]
rs7331543	0.86[EUR][1000 genomes]
rs7332263	0.86[EUR][1000 genomes]
rs7337345	0.86[EUR][1000 genomes]
rs7982863	0.86[EUR][1000 genomes]
rs7983320	0.99[ASN][1000 genomes]
rs7985799	0.86[EUR][1000 genomes]
rs7993874	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994726	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995878	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996734	0.97[ASN][1000 genomes]
rs8000468	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883514	0.85[EUR][1000 genomes]
rs883527	0.86[EUR][1000 genomes]
rs9285112	0.84[EUR][1000 genomes]
rs9315473	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938214	0.86[EUR][1000 genomes]
rs938216	0.86[EUR][1000 genomes]
rs938217	0.86[EUR][1000 genomes]
rs9547735	0.85[EUR][1000 genomes]
rs9566189	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566190	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566191	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566192	1.00[ASN][1000 genomes]
rs9576194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576195	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576200	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576201	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576203	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576204	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576206	1.00[ASN][1000 genomes]
rs9603143	0.85[EUR][1000 genomes]
rs9788310	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37746200-37748200	Enhancers	Fetal Muscle Leg	muscle
2	chr13:37746800-37748200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:37746800-37751600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:37747000-37748200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:37747000-37749400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr13:37747200-37748200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:37747200-37748200	Enhancers	Osteobl	bone
8	chr13:37747200-37748400	Enhancers	NHDF-Ad	bronchial
9	chr13:37747200-37748400	Enhancers	NHLF	lung
10	chr13:37747400-37752400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:37747600-37748200	Enhancers	NH-A	brain
12	chr13:37747600-37752400	Enhancers	Fetal Lung	lung
13	chr13:37747800-37748200	Enhancers	NHEK	skin
14	chr13:37748000-37749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:37748000-37749400	Weak transcription	HSMMtube	muscle
16	chr13:37748000-37749600	Weak transcription	Muscle Satellite Cultured Cells	--

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