Variant report

Variant	rs17822604
Chromosome Location	chr13:37766139-37766140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11616599	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336758	0.82[EUR][1000 genomes]
rs1336759	0.82[EUR][1000 genomes]
rs1336760	0.89[EUR][1000 genomes]
rs1359212	0.80[CHB][hapmap]
rs1415073	0.84[EUR][1000 genomes]
rs1591586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806525	0.83[EUR][1000 genomes]
rs1832251	0.83[EUR][1000 genomes]
rs2036990	0.83[EUR][1000 genomes]
rs2036991	0.83[EUR][1000 genomes]
rs2050567	0.83[EUR][1000 genomes]
rs3858861	0.82[EUR][1000 genomes]
rs3858862	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4054538	0.82[EUR][1000 genomes]
rs4054539	0.82[EUR][1000 genomes]
rs4054541	0.83[EUR][1000 genomes]
rs4098253	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4098254	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4359318	0.86[CHB][hapmap]
rs4485227	0.82[EUR][1000 genomes]
rs4519211	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4601911	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4943445	0.85[CHD][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs4943446	0.83[EUR][1000 genomes]
rs4943447	0.83[EUR][1000 genomes]
rs4943448	0.83[EUR][1000 genomes]
rs4943453	0.80[CHB][hapmap]
rs61120216	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61135832	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563514	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563515	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72621290	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7327488	0.83[EUR][1000 genomes]
rs7330353	0.83[EUR][1000 genomes]
rs7330721	0.82[EUR][1000 genomes]
rs7331543	0.83[EUR][1000 genomes]
rs7332263	0.83[EUR][1000 genomes]
rs7337345	0.83[EUR][1000 genomes]
rs7982863	0.83[EUR][1000 genomes]
rs7983320	1.00[ASN][1000 genomes]
rs7985799	0.83[EUR][1000 genomes]
rs7993874	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7994726	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7995878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7996734	0.96[ASN][1000 genomes]
rs8000468	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883514	0.82[EUR][1000 genomes]
rs883527	0.83[EUR][1000 genomes]
rs9285112	0.85[EUR][1000 genomes]
rs9315473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs938214	0.83[EUR][1000 genomes]
rs938216	0.83[EUR][1000 genomes]
rs938217	0.83[EUR][1000 genomes]
rs9547735	0.84[EUR][1000 genomes]
rs9566189	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566190	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566191	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566192	0.99[ASN][1000 genomes]
rs9576177	0.82[CHD][hapmap]
rs9576194	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576195	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576196	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576197	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576198	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576199	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576200	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576201	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576203	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576204	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576206	0.99[ASN][1000 genomes]
rs9603143	0.82[EUR][1000 genomes]
rs9788310	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37761600-37766400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:37761600-37767000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:37761600-37767000	Weak transcription	HMEC	breast
4	chr13:37761800-37767000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:37766000-37766400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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