Variant report

Variant	rs8002559
Chromosome Location	chr13:37733843-37733844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1336757	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336758	1.00[ASN][1000 genomes]
rs1336759	1.00[ASN][1000 genomes]
rs1336760	1.00[ASN][1000 genomes]
rs1415073	1.00[ASN][1000 genomes]
rs1806525	1.00[ASN][1000 genomes]
rs1832251	1.00[ASN][1000 genomes]
rs2036990	1.00[ASN][1000 genomes]
rs2036991	1.00[ASN][1000 genomes]
rs2050567	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3858861	1.00[ASN][1000 genomes]
rs4054538	0.95[ASN][1000 genomes]
rs4054539	1.00[ASN][1000 genomes]
rs4054541	1.00[ASN][1000 genomes]
rs4463963	1.00[ASN][1000 genomes]
rs4485227	1.00[ASN][1000 genomes]
rs4943445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4943446	1.00[ASN][1000 genomes]
rs4943447	1.00[ASN][1000 genomes]
rs4943448	1.00[ASN][1000 genomes]
rs7317466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327488	1.00[ASN][1000 genomes]
rs7330353	0.99[ASN][1000 genomes]
rs7330721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7331543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7332263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7337345	1.00[ASN][1000 genomes]
rs7982863	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7983320	0.84[EUR][1000 genomes]
rs7985799	1.00[ASN][1000 genomes]
rs7996734	0.84[EUR][1000 genomes]
rs883514	1.00[ASN][1000 genomes]
rs883527	1.00[ASN][1000 genomes]
rs9285112	1.00[ASN][1000 genomes]
rs938214	1.00[ASN][1000 genomes]
rs938216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs938217	1.00[ASN][1000 genomes]
rs9532008	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532009	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9547733	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547734	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547735	1.00[ASN][1000 genomes]
rs9547736	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547739	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547740	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566192	0.83[EUR][1000 genomes]
rs9576206	0.84[EUR][1000 genomes]
rs9603143	1.00[ASN][1000 genomes]
rs9788310	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37722400-37740600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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