Variant report

Variant	rs2345363
Chromosome Location	chr5:93396702-93396703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10062291	0.91[EUR][1000 genomes]
rs10070314	1.00[EUR][1000 genomes]
rs10076457	1.00[EUR][1000 genomes]
rs10476595	1.00[EUR][1000 genomes]
rs11135399	0.83[EUR][1000 genomes]
rs13161203	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2345364	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4869205	0.81[EUR][1000 genomes]
rs4869208	1.00[EUR][1000 genomes]
rs6873825	0.91[EUR][1000 genomes]
rs6894989	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314091	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93348400-93399000	Weak transcription	Esophagus	oesophagus
2	chr5:93354800-93400200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:93354800-93400200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:93355000-93398400	Weak transcription	Right Ventricle	heart
5	chr5:93357800-93399200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:93358400-93396800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:93362000-93398600	Weak transcription	Gastric	stomach
8	chr5:93370600-93398400	Weak transcription	Aorta	Aorta
9	chr5:93380400-93403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:93380600-93398400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:93380600-93399000	Weak transcription	Ovary	ovary
12	chr5:93380600-93399200	Weak transcription	Fetal Lung	lung
13	chr5:93380600-93402600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:93380600-93403200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:93382400-93398800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:93384600-93398200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:93386200-93398200	Weak transcription	Fetal Intestine Small	intestine
18	chr5:93388200-93399000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:93388600-93398400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:93388600-93398400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:93388600-93399200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:93388800-93397000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr5:93390000-93397800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:93390800-93398400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:93392800-93398200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:93392800-93400200	Weak transcription	Primary T cells from cord blood	blood
27	chr5:93393200-93398400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:93393600-93413000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr5:93393800-93400200	Weak transcription	Psoas Muscle	Psoas
30	chr5:93394800-93398200	Weak transcription	Left Ventricle	heart
31	chr5:93395000-93398400	Weak transcription	Primary B cells from cord blood	blood
32	chr5:93395000-93399200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr5:93396600-93397000	ZNF genes & repeats	Pancreas	Pancrea

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