Variant report

Variant	rs2345364
Chromosome Location	chr5:93398922-93398923
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10062291	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066088	1.00[ASN][1000 genomes]
rs10066323	1.00[ASN][1000 genomes]
rs10070314	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026280	1.00[ASN][1000 genomes]
rs1026281	1.00[ASN][1000 genomes]
rs1031422	1.00[ASN][1000 genomes]
rs10476595	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514378	1.00[ASN][1000 genomes]
rs10866759	1.00[ASN][1000 genomes]
rs11135399	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161203	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1372037	1.00[ASN][1000 genomes]
rs1453002	1.00[ASN][1000 genomes]
rs17083337	1.00[ASN][1000 genomes]
rs2344918	1.00[ASN][1000 genomes]
rs2345363	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2924375	1.00[ASN][1000 genomes]
rs2924377	1.00[ASN][1000 genomes]
rs4242233	1.00[ASN][1000 genomes]
rs4380636	1.00[ASN][1000 genomes]
rs4607342	1.00[ASN][1000 genomes]
rs4869203	1.00[ASN][1000 genomes]
rs4869204	1.00[ASN][1000 genomes]
rs4869205	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556841	1.00[ASN][1000 genomes]
rs6873825	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	1.00[ASN][1000 genomes]
rs6893023	1.00[ASN][1000 genomes]
rs6894989	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710880	1.00[ASN][1000 genomes]
rs7715555	1.00[ASN][1000 genomes]
rs9314089	1.00[ASN][1000 genomes]
rs9314090	1.00[ASN][1000 genomes]
rs9314091	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93348400-93399000	Weak transcription	Esophagus	oesophagus
2	chr5:93354800-93400200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:93354800-93400200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:93357800-93399200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:93380400-93403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:93380600-93399000	Weak transcription	Ovary	ovary
7	chr5:93380600-93399200	Weak transcription	Fetal Lung	lung
8	chr5:93380600-93402600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:93380600-93403200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:93388200-93399000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:93388600-93399200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:93392800-93400200	Weak transcription	Primary T cells from cord blood	blood
13	chr5:93393600-93413000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:93393800-93400200	Weak transcription	Psoas Muscle	Psoas
15	chr5:93395000-93399200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:93397800-93399400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:93397800-93400000	Weak transcription	Brain Anterior Caudate	brain
18	chr5:93398200-93399200	Enhancers	Left Ventricle	heart
19	chr5:93398200-93399600	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr5:93398400-93399000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:93398400-93399200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr5:93398400-93399200	Enhancers	Right Ventricle	heart
23	chr5:93398400-93399400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr5:93398400-93399400	ZNF genes & repeats	Aorta	Aorta
25	chr5:93398400-93402000	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr5:93398600-93399400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:93398600-93399400	Enhancers	Gastric	stomach
28	chr5:93398600-93402600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr5:93398800-93399000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr5:93398800-93404200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:93398800-93430800	Weak transcription	Pancreas	Pancrea

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