Variant report

Variant	rs6894989
Chromosome Location	chr5:93419144-93419145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10062291	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066323	1.00[ASN][1000 genomes]
rs10070314	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076457	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026280	1.00[ASN][1000 genomes]
rs1026281	1.00[ASN][1000 genomes]
rs1031422	1.00[ASN][1000 genomes]
rs10476595	1.00[CEU][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514378	1.00[ASN][1000 genomes]
rs10866759	1.00[ASN][1000 genomes]
rs11135399	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161203	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1453002	1.00[ASN][1000 genomes]
rs2345363	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2345364	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924375	1.00[ASN][1000 genomes]
rs2924377	1.00[ASN][1000 genomes]
rs4242233	1.00[ASN][1000 genomes]
rs4380636	1.00[ASN][1000 genomes]
rs4607342	1.00[ASN][1000 genomes]
rs4869203	1.00[ASN][1000 genomes]
rs4869204	1.00[ASN][1000 genomes]
rs4869205	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869208	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556841	1.00[ASN][1000 genomes]
rs6873825	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	1.00[ASN][1000 genomes]
rs6893023	1.00[ASN][1000 genomes]
rs7710880	1.00[ASN][1000 genomes]
rs9314090	1.00[ASN][1000 genomes]
rs9314091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93398800-93430800	Weak transcription	Pancreas	Pancrea
2	chr5:93404200-93424000	Weak transcription	Fetal Brain Male	brain
3	chr5:93405200-93421000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:93409000-93421200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93409400-93429000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:93414200-93424800	Weak transcription	Brain Angular Gyrus	brain
7	chr5:93415200-93419800	Weak transcription	Right Atrium	heart
8	chr5:93415200-93421200	Weak transcription	Aorta	Aorta
9	chr5:93415200-93427200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:93416600-93421200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:93416600-93445800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:93417600-93430800	Weak transcription	Fetal Kidney	kidney
13	chr5:93417600-93439000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr5:93417800-93419200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:93418000-93420800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:93418600-93419200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:93418800-93419200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:93419000-93419200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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