Variant report

Variant	rs11135399
Chromosome Location	chr5:93259901-93259902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93259705..93262376-chr5:93294800..93297613,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10062291	1.00[ASN][1000 genomes]
rs10066088	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066323	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070314	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076457	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026280	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026281	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031422	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476595	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514378	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866759	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161203	0.83[EUR][1000 genomes]
rs1372037	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453002	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083315	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083337	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869277	0.81[EUR][1000 genomes]
rs2119449	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344918	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345363	0.83[EUR][1000 genomes]
rs2345364	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924375	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924377	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147150	0.90[EUR][1000 genomes]
rs4242233	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380636	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869203	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869204	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869208	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57046989	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57881693	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556835	0.80[EUR][1000 genomes]
rs6556841	1.00[ASN][1000 genomes]
rs6868462	1.00[ASN][1000 genomes]
rs6868481	1.00[ASN][1000 genomes]
rs6873825	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893023	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894989	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137117	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137123	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137126	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137133	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137142	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710880	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715555	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723944	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729237	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730993	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314089	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314090	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1028893	chr5:93213264-93276883	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020849	chr5:93228065-93279216	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1030870	chr5:93242611-93282996	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv980573	chr5:93255694-93260934	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93226800-93269600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:93228000-93266600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:93249600-93261000	Weak transcription	NHDF-Ad	bronchial
5	chr5:93250000-93262200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:93250200-93273800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:93252200-93284400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:93253200-93263200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr5:93257000-93270200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:93257200-93287400	Weak transcription	Primary B cells from cord blood	blood
11	chr5:93257400-93260400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:93259800-93263200	Enhancers	NHEK	skin

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