Variant report

Variant	rs6556835
Chromosome Location	chr5:93192764-93192765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10066088	0.82[EUR][1000 genomes]
rs10066323	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1026280	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1026281	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1031422	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10514378	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10866759	0.82[EUR][1000 genomes]
rs11135399	0.80[EUR][1000 genomes]
rs1372037	0.82[EUR][1000 genomes]
rs1453002	0.84[AMR][1000 genomes]
rs17083315	0.82[EUR][1000 genomes]
rs17083337	0.82[EUR][1000 genomes]
rs2119449	0.82[EUR][1000 genomes]
rs2344918	0.82[EUR][1000 genomes]
rs2924375	0.82[EUR][1000 genomes]
rs2924377	0.82[EUR][1000 genomes]
rs35147150	0.82[EUR][1000 genomes]
rs4380636	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4607342	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4869203	0.82[EUR][1000 genomes]
rs4869204	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4869205	0.82[EUR][1000 genomes]
rs57046989	0.82[EUR][1000 genomes]
rs57881693	0.82[EUR][1000 genomes]
rs6874223	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6893023	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73137117	0.82[EUR][1000 genomes]
rs73137123	0.82[EUR][1000 genomes]
rs73137126	0.82[EUR][1000 genomes]
rs73137133	0.82[EUR][1000 genomes]
rs73137142	0.82[EUR][1000 genomes]
rs7710880	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7715555	0.82[EUR][1000 genomes]
rs7723944	0.82[EUR][1000 genomes]
rs7730993	0.82[EUR][1000 genomes]
rs9314089	0.82[EUR][1000 genomes]
rs9314090	0.82[EUR][1000 genomes]
rs9314091	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3328201	chr5:93189496-93194694	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
2	chr5:93174400-93216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93177400-93209200	Weak transcription	Gastric	stomach
4	chr5:93180200-93193600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:93180600-93195200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:93180800-93193400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:93180800-93203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:93181000-93193800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:93181200-93195200	Weak transcription	Psoas Muscle	Psoas
10	chr5:93181200-93223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:93181400-93193400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:93181400-93193600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:93181400-93204000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:93181400-93222600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:93181400-93231200	Weak transcription	Adipose Nuclei	Adipose
16	chr5:93181600-93193400	Weak transcription	Left Ventricle	heart
17	chr5:93181600-93193600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr5:93181600-93193600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:93181600-93193800	Weak transcription	Fetal Lung	lung
20	chr5:93181600-93193800	Weak transcription	HSMMtube	muscle
21	chr5:93181600-93222000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:93181800-93193400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:93181800-93193600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:93182000-93193800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:93182000-93222600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr5:93183000-93193800	Weak transcription	Primary T cells from cord blood	blood
27	chr5:93185000-93211400	Weak transcription	Thymus	Thymus
28	chr5:93187000-93199600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:93190800-93212000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:93191200-93193800	Weak transcription	Fetal Intestine Large	intestine
31	chr5:93191400-93193800	Weak transcription	Ovary	ovary
32	chr5:93191600-93211600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:93191800-93209400	Weak transcription	Brain Angular Gyrus	brain
34	chr5:93192000-93193400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:93192000-93199000	Weak transcription	Placenta	Placenta
36	chr5:93192400-93195000	Weak transcription	Right Ventricle	heart
37	chr5:93192600-93195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr5:93192600-93222000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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