Variant report

Variant	rs73137123
Chromosome Location	chr5:93053861-93053862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10066088	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066323	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026280	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026281	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514378	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135399	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453002	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083315	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869277	0.90[EUR][1000 genomes]
rs2119449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147150	1.00[EUR][1000 genomes]
rs4242233	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869204	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57046989	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57881693	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556835	0.82[EUR][1000 genomes]
rs6868462	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868481	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6873825	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893023	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137117	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137126	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137142	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710880	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715555	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723944	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729237	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730993	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314091	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93052000-93057000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:93053000-93057000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:93053200-93055200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:93053200-93055600	Weak transcription	Fetal Intestine Small	intestine
9	chr5:93053200-93056800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:93053200-93057200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:93053200-93058800	Weak transcription	A549	lung
12	chr5:93053400-93055200	Weak transcription	Brain Anterior Caudate	brain
13	chr5:93053400-93055200	Weak transcription	Fetal Heart	heart
14	chr5:93053400-93055600	Weak transcription	Fetal Intestine Large	intestine
15	chr5:93053400-93056800	Weak transcription	Fetal Kidney	kidney
16	chr5:93053400-93057000	Weak transcription	HepG2	liver
17	chr5:93053600-93055000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:93053600-93056800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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