Variant report

Variant	rs1869277
Chromosome Location	chr5:93171444-93171445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10057664	0.81[YRI][hapmap]
rs10066088	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10066323	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs1026280	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes]
rs1026281	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1031422	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10514378	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs10866759	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11135399	0.81[EUR][1000 genomes]
rs12054831	0.89[YRI][hapmap]
rs12653528	0.88[YRI][hapmap]
rs1349711	0.81[YRI][hapmap]
rs1372037	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1453002	1.00[CEU][hapmap]
rs17083315	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083337	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2045019	0.81[YRI][hapmap]
rs2045020	0.96[YRI][hapmap]
rs2084916	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2119449	0.90[EUR][1000 genomes]
rs2344918	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2924375	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2924377	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35147150	0.90[EUR][1000 genomes]
rs4242233	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4380636	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4607342	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4869203	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4869204	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4869205	0.83[EUR][1000 genomes]
rs57046989	0.90[EUR][1000 genomes]
rs57881693	0.90[EUR][1000 genomes]
rs6556838	1.00[YRI][hapmap]
rs6556839	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6874223	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs6893023	1.00[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73137117	0.90[EUR][1000 genomes]
rs73137123	0.90[EUR][1000 genomes]
rs73137126	0.90[EUR][1000 genomes]
rs73137133	0.90[EUR][1000 genomes]
rs73137142	0.90[EUR][1000 genomes]
rs7710880	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7715555	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7723944	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7729237	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7730993	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7736892	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs896729	0.96[YRI][hapmap]
rs9314089	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9314090	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9314091	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
2	chr5:93131200-93179200	Weak transcription	Ovary	ovary
3	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
4	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
8	chr5:93162200-93179600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:93163800-93179800	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:93164600-93180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:93165000-93179800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:93166400-93180400	Weak transcription	Primary B cells from cord blood	blood
13	chr5:93167400-93178200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:93167400-93180200	Weak transcription	Primary T cells from cord blood	blood
15	chr5:93168200-93179400	Weak transcription	HSMM	muscle

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