Variant report

Variant	rs896729
Chromosome Location	chr5:93222178-93222179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:93222125-93222467	HepG2	liver:	n/a	chr5:93222422-93222435 chr5:93222296-93222307
2	CEBPB	chr5:93222151-93222458	A549	lung:	n/a	chr5:93222422-93222435 chr5:93222296-93222307
3	USF1	chr5:93221875-93222190	H1-hESC	embryonic stem cell:	n/a	chr5:93221985-93221996
4	RFX5	chr5:93222141-93222403	HepG2	liver:	n/a	chr5:93222339-93222348
5	CEBPB	chr5:93222120-93222477	IMR90	lung:	n/a	chr5:93222422-93222435 chr5:93222296-93222307
6	CEBPB	chr5:93222163-93222453	Hela-S3	cervix:	n/a	chr5:93222422-93222435 chr5:93222296-93222307
7	EBF1	chr5:93222161-93222192	GM12878	blood:	n/a	n/a
8	FOXA1	chr5:93222172-93222463	HepG2	liver:	n/a	chr5:93222368-93222380
9	CEBPB	chr5:93222093-93222416	MCF-7	breast:	n/a	chr5:93222296-93222307

Variant related genes	Relation type
FAM172A	TF binding region

Extended variants
information (count: 202 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10036829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10038424	0.97[ASN][1000 genomes]
rs10038828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10038831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10041792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10044139	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10045836	0.97[ASN][1000 genomes]
rs10050364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10050465	0.82[ASN][1000 genomes]
rs10051878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10052662	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10053405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10054790	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10054903	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs10055340	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10055741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10056879	1.00[JPT][hapmap]
rs10057130	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10057664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057814	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10058331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10060160	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10060331	0.88[ASN][1000 genomes]
rs10061069	0.89[CEU][hapmap]
rs10061377	0.97[ASN][1000 genomes]
rs10062711	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10064158	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10064368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10065056	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10066323	0.85[MKK][hapmap];0.80[YRI][hapmap]
rs10066431	0.97[ASN][1000 genomes]
rs10066791	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10067259	0.88[ASN][1000 genomes]
rs10067541	0.83[ASN][1000 genomes]
rs10067754	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10070350	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10071805	0.83[ASN][1000 genomes]
rs10075217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10076052	0.85[ASN][1000 genomes]
rs10076192	0.82[ASN][1000 genomes]
rs10076965	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10078194	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10078941	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10079708	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10214278	0.86[JPT][hapmap]
rs1026279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031422	0.96[YRI][hapmap]
rs1031423	0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs1031424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1038686	0.83[ASN][1000 genomes]
rs10476520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476522	0.97[ASN][1000 genomes]
rs10476588	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476590	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs10476596	0.85[CHD][hapmap]
rs10476597	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10476598	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10514378	0.85[MKK][hapmap];0.80[YRI][hapmap]
rs10514380	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10866759	0.82[LWK][hapmap]
rs10866760	0.90[TSI][hapmap]
rs11135394	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs11135397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948511	0.83[CEU][hapmap];0.90[TSI][hapmap]
rs12054831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12109629	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12153501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12188163	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12332731	0.88[ASN][1000 genomes]
rs12653528	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12716453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12716454	0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs12716456	1.00[CHB][hapmap]
rs12716457	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13153987	0.97[ASN][1000 genomes]
rs13154000	0.85[ASN][1000 genomes]
rs13154650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13155452	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13156202	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13156865	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13161885	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs13164315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13165400	0.85[ASN][1000 genomes]
rs13167027	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs13170509	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13171131	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13173952	0.83[ASN][1000 genomes]
rs13177800	0.85[ASN][1000 genomes]
rs13178857	0.86[ASN][1000 genomes]
rs13181456	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13182631	0.97[ASN][1000 genomes]
rs13185660	0.82[ASN][1000 genomes]
rs13186432	0.81[EUR][1000 genomes]
rs13357713	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13361613	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs1349711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1470150	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs167570	0.85[ASN][1000 genomes]
rs17083297	0.86[ASN][1000 genomes]
rs17083377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083380	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs17312456	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17314762	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17314797	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs17314825	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs17372057	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17372615	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17372649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17372725	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17374166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17374627	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1869277	0.96[YRI][hapmap]
rs1901736	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043979	0.89[CEU][hapmap]
rs2045019	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2045020	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2084916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085960	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2290937	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs28412976	0.94[ASN][1000 genomes]
rs28418572	0.91[ASN][1000 genomes]
rs28526002	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28534784	0.85[ASN][1000 genomes]
rs28594545	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28610997	0.94[ASN][1000 genomes]
rs28645862	0.85[ASN][1000 genomes]
rs28705226	0.85[ASN][1000 genomes]
rs2924374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2924375	0.89[LWK][hapmap]
rs34454564	0.88[ASN][1000 genomes]
rs34592268	0.94[ASN][1000 genomes]
rs34621188	0.97[ASN][1000 genomes]
rs34891708	0.97[ASN][1000 genomes]
rs34967135	0.97[ASN][1000 genomes]
rs35107028	0.85[ASN][1000 genomes]
rs35372313	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35426871	0.91[ASN][1000 genomes]
rs35496867	0.97[ASN][1000 genomes]
rs35747258	0.85[ASN][1000 genomes]
rs35791029	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35878747	0.88[ASN][1000 genomes]
rs36042718	0.97[ASN][1000 genomes]
rs4380636	0.81[LWK][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap]
rs4607342	0.82[LWK][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap]
rs55724660	0.97[ASN][1000 genomes]
rs55947981	0.97[ASN][1000 genomes]
rs56108532	0.97[ASN][1000 genomes]
rs6556833	0.89[CEU][hapmap]
rs6556834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556838	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap]
rs6556839	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66564678	0.97[ASN][1000 genomes]
rs67150649	0.88[ASN][1000 genomes]
rs67328989	0.94[ASN][1000 genomes]
rs68122392	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6859757	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6865441	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6868067	0.83[ASN][1000 genomes]
rs6874223	0.80[YRI][hapmap]
rs6874766	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6877030	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6877616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6879620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6890998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6892055	0.91[ASN][1000 genomes]
rs6893023	0.83[MKK][hapmap];0.92[YRI][hapmap]
rs6895356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6898507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6898842	0.97[ASN][1000 genomes]
rs72786647	0.85[ASN][1000 genomes]
rs72786702	0.94[ASN][1000 genomes]
rs7701011	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7701114	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7701314	0.94[ASN][1000 genomes]
rs7701974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7702348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7702649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7708175	0.84[TSI][hapmap]
rs7713956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715562	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7717718	0.83[ASN][1000 genomes]
rs7721668	0.83[CEU][hapmap];0.90[TSI][hapmap]
rs7729807	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7732578	0.84[TSI][hapmap]
rs7734897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7735009	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs7736620	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7736892	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314086	0.88[ASN][1000 genomes]
rs9314092	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs9314093	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9885329	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033466	chr5:93201089-93250608	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1028893	chr5:93213264-93276883	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93181200-93223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr5:93181400-93222600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:93181400-93231200	Weak transcription	Adipose Nuclei	Adipose
4	chr5:93182000-93222600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:93194200-93222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
7	chr5:93194400-93222400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:93194400-93222400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:93194400-93222600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:93194400-93232800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:93195600-93222200	Weak transcription	Dnd41	blood
12	chr5:93195800-93222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:93196200-93222600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:93202200-93222800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:93202400-93226400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:93207800-93226200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:93210000-93222400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:93210400-93222600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:93210400-93232200	Weak transcription	Primary T cells from cord blood	blood
20	chr5:93211200-93222800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr5:93211400-93222200	Weak transcription	Ovary	ovary
22	chr5:93212600-93222400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:93213000-93256400	Weak transcription	Primary B cells from cord blood	blood
24	chr5:93215000-93225600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:93216600-93232000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:93217000-93222800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:93218000-93230000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:93219600-93226800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:93219800-93222200	Weak transcription	Fetal Lung	lung
30	chr5:93219800-93226200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:93219800-93228800	Weak transcription	Psoas Muscle	Psoas
32	chr5:93220000-93222200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:93220000-93222200	Weak transcription	NHDF-Ad	bronchial
34	chr5:93220200-93222400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr5:93220800-93223400	Enhancers	Liver	Liver
36	chr5:93221200-93222800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr5:93221200-93223000	Enhancers	HepG2	liver
38	chr5:93221800-93222200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:93221800-93223000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr5:93222000-93222400	Genic enhancers	HSMM	muscle
41	chr5:93222000-93222600	Enhancers	Stomach Smooth Muscle	stomach
42	chr5:93222000-93222800	Enhancers	HSMMtube	muscle
43	chr5:93222000-93222800	Enhancers	NH-A	brain
44	chr5:93222000-93223200	Enhancers	Fetal Kidney	kidney
45	chr5:93222000-93223600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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