Variant report

Variant	rs10476596
Chromosome Location	chr5:93367074-93367075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93361612..93364131-chr5:93365810..93367626,2	MCF-7	breast:
2	chr5:93366072..93368936-chr5:93371840..93373381,2	K562	blood:

Extended variants
information (count: 190 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs10035340	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10036829	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10036891	0.86[AMR][1000 genomes]
rs10040648	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10044066	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10044139	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10050465	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10052662	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10053405	0.93[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10054790	0.92[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10054903	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10055340	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10055741	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10055994	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10056879	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10057130	0.93[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10057605	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057664	0.85[CHD][hapmap]
rs10057814	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058331	0.93[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10059230	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10060160	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061080	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10061099	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061377	0.86[AMR][1000 genomes]
rs10062711	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10063612	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064368	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10064520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10065056	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10066791	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10067259	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10070390	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10072232	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10072592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075217	0.87[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs10076052	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10076192	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10078194	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10078941	0.93[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10079708	0.93[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10214278	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1026279	0.85[CHD][hapmap]
rs10440717	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10476522	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10476590	0.93[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10476591	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10476597	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10476598	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10476599	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10476601	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10476602	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10514380	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10514382	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11135397	0.85[CHD][hapmap]
rs12109629	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12152763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12153501	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12153506	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12153788	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187701	0.93[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12188163	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12188453	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12189466	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12374432	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12374463	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12374470	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12374488	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12653528	0.85[CHD][hapmap]
rs12716453	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12716454	0.85[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12716456	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12716457	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12716460	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12716462	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13153245	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13154249	0.86[AMR][1000 genomes]
rs13156002	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13156865	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13163610	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes]
rs13165147	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13169675	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13170509	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13171131	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13173952	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174700	0.91[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs13177800	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13181660	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13185608	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13185660	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13186579	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13356088	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13361613	0.93[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1349711	0.85[CHD][hapmap]
rs17083455	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17314074	1.00[AFR][1000 genomes]
rs17314762	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17314797	0.93[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17314825	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17315943	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17323433	0.92[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs17374166	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17374627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17376207	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17376456	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2045019	0.85[CHD][hapmap]
rs2045020	0.85[CHD][hapmap]
rs2085960	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2290937	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28412976	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28539612	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28575883	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28610997	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28633397	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28637444	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28645862	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28705226	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34013242	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34068652	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34138834	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34184666	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34384674	0.84[AMR][1000 genomes]
rs34454564	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34592268	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34595581	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34621188	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34673483	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34756085	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34854140	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34967135	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35075119	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35184505	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35426871	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35496867	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35747258	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36026719	0.86[AMR][1000 genomes]
rs36091096	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3940842	0.93[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4547912	0.93[AMR][1000 genomes]
rs55724660	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55832164	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55947981	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56046246	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56108532	0.88[EUR][1000 genomes]
rs56373208	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58734583	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59472588	0.82[EUR][1000 genomes]
rs61132622	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6556838	0.85[CHD][hapmap]
rs6556839	0.85[CHD][hapmap]
rs66696214	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66978370	0.86[AMR][1000 genomes]
rs67066109	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67150649	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67328989	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6859757	0.93[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs6865441	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6867042	0.93[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes]
rs6874766	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6877030	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs6898842	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71641007	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72786662	0.86[ASN][1000 genomes]
rs72786702	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72788365	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7701011	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7701314	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7701974	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7702521	0.90[AMR][1000 genomes]
rs7715562	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7718842	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728736	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7734897	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7736620	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs896729	0.85[CHD][hapmap]
rs9314092	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9314093	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9314095	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9314096	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9314099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9314100	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9314102	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9885329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968691	0.93[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9968749	0.93[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10476596	TMEM163	trans	lymphoblastoid	seeQTL

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93327000-93394600	Weak transcription	Small Intestine	intestine
2	chr5:93345000-93395200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:93346600-93376400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:93347000-93380000	Weak transcription	Thymus	Thymus
5	chr5:93348400-93399000	Weak transcription	Esophagus	oesophagus
6	chr5:93348800-93367600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:93348800-93394000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:93349200-93375000	Weak transcription	Placenta	Placenta
9	chr5:93349200-93386200	Weak transcription	Spleen	Spleen
10	chr5:93351000-93394400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:93351800-93384200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:93352400-93367800	Weak transcription	Brain Germinal Matrix	brain
13	chr5:93353400-93394600	Weak transcription	Fetal Kidney	kidney
14	chr5:93354200-93367200	Weak transcription	Adipose Nuclei	Adipose
15	chr5:93354400-93384000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:93354600-93368800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:93354800-93400200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr5:93354800-93400200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:93355000-93378800	Weak transcription	Fetal Brain Female	brain
20	chr5:93355000-93398400	Weak transcription	Right Ventricle	heart
21	chr5:93355800-93367400	Weak transcription	Psoas Muscle	Psoas
22	chr5:93355800-93367600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr5:93357200-93374400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:93357400-93393400	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:93357600-93367600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr5:93357600-93368000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:93357600-93369600	Weak transcription	Aorta	Aorta
28	chr5:93357600-93378600	Weak transcription	Fetal Lung	lung
29	chr5:93357600-93379800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:93357600-93380000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:93357600-93385800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:93357600-93393400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:93357600-93394600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr5:93357800-93380000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:93357800-93399200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:93358000-93393000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr5:93358200-93376400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:93358200-93376400	Weak transcription	Fetal Stomach	stomach
39	chr5:93358200-93385400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:93358400-93369600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr5:93358400-93396800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr5:93359000-93368800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr5:93359000-93369600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr5:93359000-93380400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr5:93359000-93381600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr5:93360600-93369600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr5:93362000-93379800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr5:93362000-93389600	Weak transcription	Lung	lung
49	chr5:93362000-93398600	Weak transcription	Gastric	stomach
50	chr5:93362200-93367200	Weak transcription	Liver	Liver

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