Variant report

Variant	rs35747258
Chromosome Location	chr5:93310129-93310130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 249 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:247)

rs_ID	r²[population]
rs10035340	0.87[AMR][1000 genomes]
rs10036829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10036891	0.83[AMR][1000 genomes]
rs10038424	0.88[ASN][1000 genomes]
rs10038828	0.88[ASN][1000 genomes]
rs10038831	0.88[ASN][1000 genomes]
rs10040648	0.87[AMR][1000 genomes]
rs10041792	0.85[ASN][1000 genomes]
rs10044066	0.88[AMR][1000 genomes]
rs10044139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10045836	0.88[ASN][1000 genomes]
rs10050364	0.85[ASN][1000 genomes]
rs10050465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10051878	0.88[ASN][1000 genomes]
rs10052662	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10053405	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10054790	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10054903	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10055340	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10055994	0.85[AMR][1000 genomes]
rs10056879	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10057130	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10057605	0.93[AMR][1000 genomes]
rs10057664	0.85[ASN][1000 genomes]
rs10057814	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10058331	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10059230	0.90[AMR][1000 genomes]
rs10060160	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061080	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10061099	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061377	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10062711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10063612	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10064158	0.85[ASN][1000 genomes]
rs10064368	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10064520	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10065056	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066431	0.88[ASN][1000 genomes]
rs10066791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10067259	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10067754	0.85[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10070390	0.90[AMR][1000 genomes]
rs10071040	0.85[ASN][1000 genomes]
rs10072232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10072592	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10075217	0.88[ASN][1000 genomes]
rs10076052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076192	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10076965	0.85[ASN][1000 genomes]
rs10078194	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10078941	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10079708	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10214278	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1026279	0.85[ASN][1000 genomes]
rs1031424	0.88[ASN][1000 genomes]
rs10440717	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10476520	0.85[ASN][1000 genomes]
rs10476522	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476588	0.85[ASN][1000 genomes]
rs10476590	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476591	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10476596	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10476597	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476598	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10476601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476602	0.85[AMR][1000 genomes]
rs10514380	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10514382	0.90[AMR][1000 genomes]
rs11135397	0.85[ASN][1000 genomes]
rs12054831	0.85[ASN][1000 genomes]
rs12109629	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12152763	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12153021	0.82[ASN][1000 genomes]
rs12153501	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153506	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12187701	0.90[AMR][1000 genomes]
rs12188163	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12188453	0.90[AMR][1000 genomes]
rs12189466	0.83[AMR][1000 genomes]
rs12332731	0.85[ASN][1000 genomes]
rs12374432	0.90[AMR][1000 genomes]
rs12374463	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12374470	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12374488	0.90[AMR][1000 genomes]
rs12653528	0.85[ASN][1000 genomes]
rs12716453	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12716454	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12716456	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12716457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12716460	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12716462	0.90[AMR][1000 genomes]
rs13153245	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13153987	0.88[ASN][1000 genomes]
rs13154000	0.88[ASN][1000 genomes]
rs13154249	0.83[AMR][1000 genomes]
rs13154650	0.88[ASN][1000 genomes]
rs13155452	0.88[ASN][1000 genomes]
rs13156002	0.83[AMR][1000 genomes]
rs13156202	0.88[ASN][1000 genomes]
rs13156865	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13163610	0.83[AMR][1000 genomes]
rs13164315	0.88[ASN][1000 genomes]
rs13165147	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13165400	0.88[ASN][1000 genomes]
rs13169675	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13170509	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13171131	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13173952	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13174700	0.83[AMR][1000 genomes]
rs13177800	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181660	0.83[AMR][1000 genomes]
rs13182631	0.88[ASN][1000 genomes]
rs13185608	0.83[AMR][1000 genomes]
rs13185660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13186579	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13356088	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13357713	0.88[ASN][1000 genomes]
rs13361613	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1349711	0.85[ASN][1000 genomes]
rs1470150	0.88[ASN][1000 genomes]
rs167570	0.88[ASN][1000 genomes]
rs17083377	0.85[ASN][1000 genomes]
rs17083455	0.85[AMR][1000 genomes]
rs17312456	0.88[ASN][1000 genomes]
rs17314762	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17314797	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17314825	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17315943	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17323433	0.83[AMR][1000 genomes]
rs17372057	0.88[ASN][1000 genomes]
rs17372615	0.88[ASN][1000 genomes]
rs17372649	0.88[ASN][1000 genomes]
rs17372725	0.88[ASN][1000 genomes]
rs17374166	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17374627	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17376207	0.83[AMR][1000 genomes]
rs17376456	0.90[AMR][1000 genomes]
rs1901736	0.85[ASN][1000 genomes]
rs1982439	0.85[ASN][1000 genomes]
rs2045019	0.82[ASN][1000 genomes]
rs2045020	0.85[ASN][1000 genomes]
rs2045021	0.80[ASN][1000 genomes]
rs2084916	0.85[ASN][1000 genomes]
rs2085960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2290937	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28412976	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28418572	0.82[ASN][1000 genomes]
rs28526002	0.85[ASN][1000 genomes]
rs28534784	0.88[ASN][1000 genomes]
rs28575883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28594545	0.85[ASN][1000 genomes]
rs28610997	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28633397	0.90[AMR][1000 genomes]
rs28637444	0.90[AMR][1000 genomes]
rs28645862	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28705226	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34013242	0.83[AMR][1000 genomes]
rs34068652	0.83[AMR][1000 genomes]
rs34138834	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34184666	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34384674	0.88[AMR][1000 genomes]
rs34454564	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34592268	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34595581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34621188	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34673483	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34756085	0.90[AMR][1000 genomes]
rs34854140	0.81[AMR][1000 genomes]
rs34891708	0.88[ASN][1000 genomes]
rs34967135	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35075119	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35107028	0.88[ASN][1000 genomes]
rs35184505	0.90[AMR][1000 genomes]
rs35372313	0.85[ASN][1000 genomes]
rs35426871	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35496867	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35791029	0.85[ASN][1000 genomes]
rs35878747	0.85[ASN][1000 genomes]
rs36026719	0.83[AMR][1000 genomes]
rs36042718	0.88[ASN][1000 genomes]
rs36091096	0.93[AMR][1000 genomes]
rs3940842	0.90[AMR][1000 genomes]
rs4547912	0.90[AMR][1000 genomes]
rs55724660	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55832164	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55947981	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56046246	0.90[AMR][1000 genomes]
rs56108532	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56373208	0.90[AMR][1000 genomes]
rs58734583	0.83[AMR][1000 genomes]
rs61132622	0.83[AMR][1000 genomes]
rs6556834	0.85[ASN][1000 genomes]
rs66564678	0.88[ASN][1000 genomes]
rs66696214	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66978370	0.83[AMR][1000 genomes]
rs67066109	0.87[AMR][1000 genomes]
rs67150649	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67328989	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68122392	0.85[ASN][1000 genomes]
rs6859757	0.85[ASN][1000 genomes]
rs6865441	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6867042	0.90[AMR][1000 genomes]
rs6874766	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6877030	0.85[ASN][1000 genomes]
rs6877616	0.85[ASN][1000 genomes]
rs6879620	0.85[ASN][1000 genomes]
rs6881815	0.91[ASN][1000 genomes]
rs6890998	0.85[ASN][1000 genomes]
rs6892055	0.94[ASN][1000 genomes]
rs6895356	0.85[ASN][1000 genomes]
rs6898507	0.85[ASN][1000 genomes]
rs6898842	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71641007	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72786647	0.88[ASN][1000 genomes]
rs72786702	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72788365	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7701011	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701114	0.85[ASN][1000 genomes]
rs7701314	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7701974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702348	0.80[ASN][1000 genomes]
rs7702521	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7702649	0.85[ASN][1000 genomes]
rs7713956	0.85[ASN][1000 genomes]
rs7715562	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7718842	0.93[AMR][1000 genomes]
rs7728736	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736620	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736892	0.82[ASN][1000 genomes]
rs896729	0.85[ASN][1000 genomes]
rs9314086	0.85[ASN][1000 genomes]
rs9314092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314093	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314095	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314096	0.88[AMR][1000 genomes]
rs9314099	0.90[AMR][1000 genomes]
rs9314100	0.90[AMR][1000 genomes]
rs9314102	0.90[AMR][1000 genomes]
rs9885329	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9968691	0.83[AMR][1000 genomes]
rs9968749	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:93282800-93312000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93289000-93311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:93292600-93311800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
6	chr5:93300200-93312000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:93303200-93311400	Weak transcription	Primary B cells from cord blood	blood

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