Variant report

Variant	rs10038424
Chromosome Location	chr5:93193437-93193438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10036024	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10036829	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10036891	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10038828	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038831	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041792	0.85[ASN][1000 genomes]
rs10045836	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050364	0.85[ASN][1000 genomes]
rs10050465	0.85[ASN][1000 genomes]
rs10051878	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10052662	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10053405	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054790	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10054903	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055340	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10055741	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10056879	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10057130	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057664	0.97[ASN][1000 genomes]
rs10058331	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10060331	0.85[ASN][1000 genomes]
rs10061377	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062711	0.85[ASN][1000 genomes]
rs10064158	0.85[ASN][1000 genomes]
rs10064368	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066431	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066791	0.85[ASN][1000 genomes]
rs10067259	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10067541	0.80[ASN][1000 genomes]
rs10067754	0.85[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10071040	0.85[ASN][1000 genomes]
rs10071805	0.80[ASN][1000 genomes]
rs10075217	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076052	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10076192	0.85[ASN][1000 genomes]
rs10076965	0.85[ASN][1000 genomes]
rs10078194	0.82[ASN][1000 genomes]
rs10078941	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10079708	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10214278	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1026279	0.97[ASN][1000 genomes]
rs1031424	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038686	0.80[ASN][1000 genomes]
rs10476520	0.85[ASN][1000 genomes]
rs10476522	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476588	0.97[ASN][1000 genomes]
rs10476590	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476597	0.82[ASN][1000 genomes]
rs10476598	0.82[ASN][1000 genomes]
rs11135397	0.97[ASN][1000 genomes]
rs12054831	0.97[ASN][1000 genomes]
rs12109629	0.82[ASN][1000 genomes]
rs12153021	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12153501	0.82[ASN][1000 genomes]
rs12153506	0.82[ASN][1000 genomes]
rs12188163	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12332731	0.85[ASN][1000 genomes]
rs12653528	0.97[ASN][1000 genomes]
rs12716453	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12716454	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13153245	0.82[ASN][1000 genomes]
rs13153987	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154000	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154650	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13155452	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156202	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161885	0.83[EUR][1000 genomes]
rs13164315	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13165400	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13169675	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13171131	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173952	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13177800	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178857	0.83[ASN][1000 genomes]
rs13182631	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185660	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13357713	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361613	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1349711	0.97[ASN][1000 genomes]
rs1453003	0.85[ASN][1000 genomes]
rs1470150	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167570	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17083297	0.83[ASN][1000 genomes]
rs17083377	0.97[ASN][1000 genomes]
rs17312456	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17314074	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17314762	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314797	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314825	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17372057	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372615	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372649	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372725	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17374166	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17374627	0.81[EUR][1000 genomes]
rs1901736	0.97[ASN][1000 genomes]
rs1982439	0.97[ASN][1000 genomes]
rs2045019	0.94[ASN][1000 genomes]
rs2045020	0.97[ASN][1000 genomes]
rs2045021	0.91[ASN][1000 genomes]
rs2084916	0.97[ASN][1000 genomes]
rs2290937	0.82[ASN][1000 genomes]
rs28412976	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28418572	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28526002	0.85[ASN][1000 genomes]
rs28534784	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28575883	0.82[ASN][1000 genomes]
rs28594545	0.85[ASN][1000 genomes]
rs28610997	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28645862	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28705226	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2924374	0.88[ASN][1000 genomes]
rs34454564	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34592268	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34595581	0.82[ASN][1000 genomes]
rs34621188	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34673483	0.81[EUR][1000 genomes]
rs34891708	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34967135	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35107028	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35372313	0.85[ASN][1000 genomes]
rs35426871	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35496867	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747258	0.88[ASN][1000 genomes]
rs35791029	0.85[ASN][1000 genomes]
rs35878747	0.85[ASN][1000 genomes]
rs36042718	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55724660	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947981	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56108532	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556834	0.97[ASN][1000 genomes]
rs6556839	0.88[ASN][1000 genomes]
rs66564678	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67150649	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67328989	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67914792	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68122392	0.85[ASN][1000 genomes]
rs6859757	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6865441	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6868067	0.80[ASN][1000 genomes]
rs6874766	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877030	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877616	0.85[ASN][1000 genomes]
rs6879620	0.97[ASN][1000 genomes]
rs6881815	0.91[ASN][1000 genomes]
rs6890998	0.85[ASN][1000 genomes]
rs6892055	0.94[ASN][1000 genomes]
rs6895356	0.85[ASN][1000 genomes]
rs6898507	0.85[ASN][1000 genomes]
rs6898842	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786647	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786662	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72786702	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701011	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7701114	0.85[ASN][1000 genomes]
rs7701314	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701974	0.88[ASN][1000 genomes]
rs7702348	0.80[ASN][1000 genomes]
rs7702649	0.85[ASN][1000 genomes]
rs7713956	0.97[ASN][1000 genomes]
rs7715562	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717718	0.80[ASN][1000 genomes]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736620	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736892	0.94[ASN][1000 genomes]
rs896729	0.97[ASN][1000 genomes]
rs9314086	0.85[ASN][1000 genomes]
rs9314092	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9314093	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3328201	chr5:93189496-93194694	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
2	chr5:93174400-93216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93177400-93209200	Weak transcription	Gastric	stomach
4	chr5:93180200-93193600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:93180600-93195200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:93180800-93203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:93181000-93193800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:93181200-93195200	Weak transcription	Psoas Muscle	Psoas
9	chr5:93181200-93223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr5:93181400-93193600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr5:93181400-93204000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:93181400-93222600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:93181400-93231200	Weak transcription	Adipose Nuclei	Adipose
14	chr5:93181600-93193600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:93181600-93193600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:93181600-93193800	Weak transcription	Fetal Lung	lung
17	chr5:93181600-93193800	Weak transcription	HSMMtube	muscle
18	chr5:93181600-93222000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:93181800-93193600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:93182000-93193800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:93182000-93222600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:93183000-93193800	Weak transcription	Primary T cells from cord blood	blood
23	chr5:93185000-93211400	Weak transcription	Thymus	Thymus
24	chr5:93187000-93199600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:93190800-93212000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:93191200-93193800	Weak transcription	Fetal Intestine Large	intestine
27	chr5:93191400-93193800	Weak transcription	Ovary	ovary
28	chr5:93191600-93211600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:93191800-93209400	Weak transcription	Brain Angular Gyrus	brain
30	chr5:93192000-93199000	Weak transcription	Placenta	Placenta
31	chr5:93192400-93195000	Weak transcription	Right Ventricle	heart
32	chr5:93192600-93195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:93192600-93222000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr5:93193000-93194200	ZNF genes & repeats	Fetal Stomach	stomach
35	chr5:93193200-93194000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr5:93193200-93194000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
37	chr5:93193200-93194400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr5:93193200-93195400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:93193200-93195800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:93193400-93193600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:93193400-93193600	ZNF genes & repeats	Lung	lung
42	chr5:93193400-93194200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:93193400-93194200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr5:93193400-93194200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:93193400-93194200	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr5:93193400-93194200	ZNF genes & repeats	Left Ventricle	heart
47	chr5:93193400-93194400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:93193400-93194400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:93193400-93194400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:93193400-93194400	Strong transcription	Primary T cells fromperipheralblood	blood

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