Variant report

Variant	rs28418572
Chromosome Location	chr5:93144161-93144162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10036024	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10036829	0.82[ASN][1000 genomes]
rs10036891	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10038424	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10038828	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10038831	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10045836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10051878	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10052662	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10053405	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10054790	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054903	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10055340	0.82[ASN][1000 genomes]
rs10056879	0.84[EUR][1000 genomes]
rs10057130	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10057664	0.91[ASN][1000 genomes]
rs10058331	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061377	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064368	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10066431	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10067259	0.85[ASN][1000 genomes]
rs10070350	0.85[ASN][1000 genomes]
rs10075217	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10076052	0.82[ASN][1000 genomes]
rs10078941	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10079708	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10214278	0.84[EUR][1000 genomes]
rs1026279	0.91[ASN][1000 genomes]
rs1031424	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476522	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476588	0.91[ASN][1000 genomes]
rs10476590	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11135397	0.91[ASN][1000 genomes]
rs12054831	0.91[ASN][1000 genomes]
rs12153021	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12188163	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12653528	0.91[ASN][1000 genomes]
rs12716453	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12716454	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13153987	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13154000	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13154650	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13155452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13156202	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13161885	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13164315	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13165400	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13171131	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13177800	0.82[ASN][1000 genomes]
rs13182631	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13357713	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13361613	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1349711	0.91[ASN][1000 genomes]
rs1470150	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs167570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17083377	0.91[ASN][1000 genomes]
rs17312456	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17314074	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17314762	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17314797	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17314825	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372057	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17372615	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17372649	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17372725	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17374166	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1901736	0.91[ASN][1000 genomes]
rs1982439	0.91[ASN][1000 genomes]
rs2045019	0.88[ASN][1000 genomes]
rs2045020	0.91[ASN][1000 genomes]
rs2045021	0.86[ASN][1000 genomes]
rs2084916	0.91[ASN][1000 genomes]
rs28412976	0.91[ASN][1000 genomes]
rs28534784	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28610997	0.91[ASN][1000 genomes]
rs28645862	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28705226	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2924374	0.81[ASN][1000 genomes]
rs34454564	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34592268	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34621188	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34891708	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34967135	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35107028	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35426871	0.88[ASN][1000 genomes]
rs35496867	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35747258	0.82[ASN][1000 genomes]
rs36042718	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55724660	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55947981	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56108532	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6556834	0.91[ASN][1000 genomes]
rs6556839	0.81[ASN][1000 genomes]
rs66564678	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67150649	0.85[ASN][1000 genomes]
rs67328989	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67914792	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6859757	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6865441	0.82[EUR][1000 genomes]
rs6874766	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877030	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6879620	0.91[ASN][1000 genomes]
rs6881815	0.85[ASN][1000 genomes]
rs6892055	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6898842	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72786647	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72786662	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786702	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7701011	0.82[ASN][1000 genomes]
rs7701314	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7701974	0.82[ASN][1000 genomes]
rs7713956	0.91[ASN][1000 genomes]
rs7715562	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7729807	0.85[ASN][1000 genomes]
rs7734897	0.82[ASN][1000 genomes]
rs7736620	0.82[ASN][1000 genomes]
rs7736892	0.88[ASN][1000 genomes]
rs896729	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
3	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
5	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:93131200-93148800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:93131200-93179200	Weak transcription	Ovary	ovary
8	chr5:93131400-93148600	Weak transcription	Primary B cells from cord blood	blood
9	chr5:93132600-93157800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:93137000-93165400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
12	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
13	chr5:93137200-93160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:93137200-93160800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:93137200-93166800	Weak transcription	HSMM	muscle
16	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
17	chr5:93141000-93144400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:93142000-93157600	Weak transcription	Primary T cells from cord blood	blood
19	chr5:93142600-93144400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood

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