Variant report

Variant	rs28534784
Chromosome Location	chr5:93063332-93063333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93059912..93062036-chr5:93062981..93064708,2	K562	blood:

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10036024	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10036829	0.88[ASN][1000 genomes]
rs10036891	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10038424	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10038828	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10038831	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10041792	0.97[ASN][1000 genomes]
rs10045836	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10050364	0.97[ASN][1000 genomes]
rs10050465	0.85[ASN][1000 genomes]
rs10051878	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052662	0.85[ASN][1000 genomes]
rs10053405	0.88[ASN][1000 genomes]
rs10054790	0.85[ASN][1000 genomes]
rs10054903	0.88[ASN][1000 genomes]
rs10055340	0.88[ASN][1000 genomes]
rs10055741	0.83[ASN][1000 genomes]
rs10057118	0.88[ASN][1000 genomes]
rs10057130	0.88[ASN][1000 genomes]
rs10057664	0.85[ASN][1000 genomes]
rs10058331	0.85[ASN][1000 genomes]
rs10060331	0.97[ASN][1000 genomes]
rs10061377	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10062711	0.85[ASN][1000 genomes]
rs10064158	0.97[ASN][1000 genomes]
rs10064368	0.80[ASN][1000 genomes]
rs10066431	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10066791	0.85[ASN][1000 genomes]
rs10067541	0.91[ASN][1000 genomes]
rs10067754	0.97[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10071040	0.97[ASN][1000 genomes]
rs10071805	0.91[ASN][1000 genomes]
rs10075217	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10076052	0.88[ASN][1000 genomes]
rs10076192	0.85[ASN][1000 genomes]
rs10076965	0.97[ASN][1000 genomes]
rs10078941	0.85[ASN][1000 genomes]
rs10079708	0.85[ASN][1000 genomes]
rs1026279	0.85[ASN][1000 genomes]
rs1031424	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1038686	0.91[ASN][1000 genomes]
rs10476520	0.97[ASN][1000 genomes]
rs10476522	0.88[ASN][1000 genomes]
rs10476588	0.85[ASN][1000 genomes]
rs10476590	0.85[ASN][1000 genomes]
rs11135397	0.85[ASN][1000 genomes]
rs12054831	0.85[ASN][1000 genomes]
rs12153021	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12188163	0.85[ASN][1000 genomes]
rs12332731	0.97[ASN][1000 genomes]
rs12653528	0.85[ASN][1000 genomes]
rs12716453	0.85[ASN][1000 genomes]
rs12716454	0.85[ASN][1000 genomes]
rs13153987	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154000	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154650	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155452	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13156202	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161885	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13164315	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13165400	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169675	0.82[ASN][1000 genomes]
rs13171131	0.88[ASN][1000 genomes]
rs13173952	0.85[ASN][1000 genomes]
rs13177800	0.88[ASN][1000 genomes]
rs13178857	0.94[ASN][1000 genomes]
rs13181456	0.91[ASN][1000 genomes]
rs13182631	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185660	0.85[ASN][1000 genomes]
rs13357713	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13361613	0.85[ASN][1000 genomes]
rs1349711	0.85[ASN][1000 genomes]
rs1470150	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs167570	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083297	0.94[ASN][1000 genomes]
rs17083377	0.85[ASN][1000 genomes]
rs17312456	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17314074	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17314762	0.85[ASN][1000 genomes]
rs17314797	0.85[ASN][1000 genomes]
rs17314825	0.83[ASN][1000 genomes]
rs17372057	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372615	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372649	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372725	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17374166	0.85[ASN][1000 genomes]
rs1901736	0.85[ASN][1000 genomes]
rs1965712	0.82[ASN][1000 genomes]
rs1965713	0.82[ASN][1000 genomes]
rs1982439	0.85[ASN][1000 genomes]
rs2045019	0.82[ASN][1000 genomes]
rs2045020	0.85[ASN][1000 genomes]
rs2045021	0.80[ASN][1000 genomes]
rs2084916	0.85[ASN][1000 genomes]
rs28412976	0.85[ASN][1000 genomes]
rs28418572	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28526002	0.97[ASN][1000 genomes]
rs28575883	0.82[ASN][1000 genomes]
rs28594545	0.97[ASN][1000 genomes]
rs28610997	0.85[ASN][1000 genomes]
rs34592268	0.85[ASN][1000 genomes]
rs34621188	0.88[ASN][1000 genomes]
rs34891708	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34967135	0.88[ASN][1000 genomes]
rs35107028	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35372313	0.97[ASN][1000 genomes]
rs35426871	0.82[ASN][1000 genomes]
rs35496867	0.88[ASN][1000 genomes]
rs35747258	0.88[ASN][1000 genomes]
rs35791029	0.97[ASN][1000 genomes]
rs35878747	0.97[ASN][1000 genomes]
rs36042718	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55724660	0.88[ASN][1000 genomes]
rs55947981	0.88[ASN][1000 genomes]
rs56108532	0.88[ASN][1000 genomes]
rs6556834	0.85[ASN][1000 genomes]
rs66564678	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67328989	0.85[ASN][1000 genomes]
rs67914792	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68122392	0.97[ASN][1000 genomes]
rs6859757	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6868067	0.91[ASN][1000 genomes]
rs6874766	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6877030	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877616	0.97[ASN][1000 genomes]
rs6879620	0.85[ASN][1000 genomes]
rs6881815	0.91[ASN][1000 genomes]
rs6885725	0.81[ASN][1000 genomes]
rs6886025	0.88[ASN][1000 genomes]
rs6890998	0.97[ASN][1000 genomes]
rs6892055	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895356	0.97[ASN][1000 genomes]
rs6898507	0.97[ASN][1000 genomes]
rs6898842	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786647	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786662	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72786702	0.85[ASN][1000 genomes]
rs73772929	0.84[AFR][1000 genomes]
rs7701011	0.88[ASN][1000 genomes]
rs7701114	0.97[ASN][1000 genomes]
rs7701314	0.85[ASN][1000 genomes]
rs7701974	0.88[ASN][1000 genomes]
rs7702348	0.91[ASN][1000 genomes]
rs7702649	0.97[ASN][1000 genomes]
rs7713956	0.85[ASN][1000 genomes]
rs7715562	0.88[ASN][1000 genomes]
rs7717718	0.91[ASN][1000 genomes]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.88[ASN][1000 genomes]
rs7736620	0.88[ASN][1000 genomes]
rs7736892	0.82[ASN][1000 genomes]
rs896729	0.85[ASN][1000 genomes]
rs9314086	0.97[ASN][1000 genomes]
rs9314092	0.82[ASN][1000 genomes]
rs9314093	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93054400-93066200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:93057400-93080600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:93057600-93070200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:93057800-93071000	Weak transcription	Primary T cells from cord blood	blood
9	chr5:93059600-93067600	Weak transcription	Fetal Kidney	kidney
10	chr5:93059600-93071400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:93060800-93076200	Weak transcription	Left Ventricle	heart

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