Variant report

Variant	rs35107028
Chromosome Location	chr5:93051362-93051363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10036024	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10036829	0.88[ASN][1000 genomes]
rs10036891	0.89[AMR][1000 genomes]
rs10038424	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10038828	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10038831	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10041792	0.97[ASN][1000 genomes]
rs10045836	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10050364	0.97[ASN][1000 genomes]
rs10051878	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052662	0.85[ASN][1000 genomes]
rs10053405	0.88[ASN][1000 genomes]
rs10054790	0.85[ASN][1000 genomes]
rs10054903	0.88[ASN][1000 genomes]
rs10055340	0.88[ASN][1000 genomes]
rs10055741	0.83[ASN][1000 genomes]
rs10057118	0.88[ASN][1000 genomes]
rs10057130	0.88[ASN][1000 genomes]
rs10057664	0.85[ASN][1000 genomes]
rs10058331	0.85[ASN][1000 genomes]
rs10060331	0.97[ASN][1000 genomes]
rs10061377	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10064158	0.97[ASN][1000 genomes]
rs10064368	0.80[ASN][1000 genomes]
rs10066431	0.88[ASN][1000 genomes]
rs10067541	0.91[ASN][1000 genomes]
rs10067754	0.97[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10071040	0.97[ASN][1000 genomes]
rs10071805	0.91[ASN][1000 genomes]
rs10075217	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10076052	0.88[ASN][1000 genomes]
rs10076965	0.97[ASN][1000 genomes]
rs10078941	0.85[ASN][1000 genomes]
rs10079708	0.85[ASN][1000 genomes]
rs1026279	0.85[ASN][1000 genomes]
rs1031424	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1038686	0.91[ASN][1000 genomes]
rs10476520	0.97[ASN][1000 genomes]
rs10476522	0.88[ASN][1000 genomes]
rs10476588	0.85[ASN][1000 genomes]
rs10476590	0.85[ASN][1000 genomes]
rs11135397	0.85[ASN][1000 genomes]
rs12054831	0.85[ASN][1000 genomes]
rs12153021	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12188163	0.85[ASN][1000 genomes]
rs12332731	0.97[ASN][1000 genomes]
rs12653528	0.85[ASN][1000 genomes]
rs12716453	0.85[ASN][1000 genomes]
rs12716454	0.85[ASN][1000 genomes]
rs13153987	0.88[ASN][1000 genomes]
rs13154000	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154650	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155452	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13156202	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161885	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13164315	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13165400	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169675	0.82[ASN][1000 genomes]
rs13171131	0.88[ASN][1000 genomes]
rs13173952	0.85[ASN][1000 genomes]
rs13177800	0.88[ASN][1000 genomes]
rs13178857	0.94[ASN][1000 genomes]
rs13181456	0.91[ASN][1000 genomes]
rs13182631	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185660	0.85[ASN][1000 genomes]
rs13357713	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13361613	0.85[ASN][1000 genomes]
rs1349711	0.85[ASN][1000 genomes]
rs1470150	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs167570	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083297	0.94[ASN][1000 genomes]
rs17083377	0.85[ASN][1000 genomes]
rs17312456	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17314074	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17314762	0.85[ASN][1000 genomes]
rs17314797	0.85[ASN][1000 genomes]
rs17314825	0.83[ASN][1000 genomes]
rs17372057	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372615	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372649	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372725	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17374166	0.85[ASN][1000 genomes]
rs1901736	0.85[ASN][1000 genomes]
rs1965712	0.82[ASN][1000 genomes]
rs1965713	0.82[ASN][1000 genomes]
rs1982439	0.85[ASN][1000 genomes]
rs2045019	0.82[ASN][1000 genomes]
rs2045020	0.85[ASN][1000 genomes]
rs2045021	0.80[ASN][1000 genomes]
rs2084916	0.85[ASN][1000 genomes]
rs28412976	0.85[ASN][1000 genomes]
rs28418572	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28526002	0.97[ASN][1000 genomes]
rs28534784	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28594545	0.97[ASN][1000 genomes]
rs28610997	0.85[ASN][1000 genomes]
rs34592268	0.85[ASN][1000 genomes]
rs34621188	0.88[ASN][1000 genomes]
rs34891708	0.88[ASN][1000 genomes]
rs34967135	0.88[ASN][1000 genomes]
rs35372313	0.97[ASN][1000 genomes]
rs35426871	0.82[ASN][1000 genomes]
rs35496867	0.88[ASN][1000 genomes]
rs35747258	0.88[ASN][1000 genomes]
rs35791029	0.97[ASN][1000 genomes]
rs35878747	0.97[ASN][1000 genomes]
rs36042718	0.88[ASN][1000 genomes]
rs55724660	0.88[ASN][1000 genomes]
rs55947981	0.88[ASN][1000 genomes]
rs56108532	0.88[ASN][1000 genomes]
rs6556834	0.85[ASN][1000 genomes]
rs66564678	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67328989	0.85[ASN][1000 genomes]
rs67914792	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68122392	0.97[ASN][1000 genomes]
rs6859757	0.85[ASN][1000 genomes]
rs6868067	0.91[ASN][1000 genomes]
rs6874766	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6877030	0.85[ASN][1000 genomes]
rs6877616	0.97[ASN][1000 genomes]
rs6879620	0.85[ASN][1000 genomes]
rs6881815	0.91[ASN][1000 genomes]
rs6885725	0.81[ASN][1000 genomes]
rs6886025	0.88[ASN][1000 genomes]
rs6890998	0.97[ASN][1000 genomes]
rs6892055	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895356	0.97[ASN][1000 genomes]
rs6898507	0.97[ASN][1000 genomes]
rs6898842	0.88[ASN][1000 genomes]
rs72786647	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786662	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72786702	0.85[ASN][1000 genomes]
rs7701011	0.88[ASN][1000 genomes]
rs7701114	0.97[ASN][1000 genomes]
rs7701314	0.85[ASN][1000 genomes]
rs7701974	0.88[ASN][1000 genomes]
rs7702348	0.91[ASN][1000 genomes]
rs7702649	0.97[ASN][1000 genomes]
rs7713956	0.85[ASN][1000 genomes]
rs7715562	0.88[ASN][1000 genomes]
rs7717718	0.91[ASN][1000 genomes]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.88[ASN][1000 genomes]
rs7736620	0.88[ASN][1000 genomes]
rs7736892	0.82[ASN][1000 genomes]
rs896729	0.85[ASN][1000 genomes]
rs9314086	0.97[ASN][1000 genomes]
rs9314092	0.82[ASN][1000 genomes]
rs9314093	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv823133	chr5:93049250-93051884	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93041000-93051400	Weak transcription	Fetal Heart	heart
4	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:93049200-93052800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:93050200-93053000	Weak transcription	HUVEC	blood vessel
8	chr5:93050400-93052400	Enhancers	Fetal Intestine Small	intestine
9	chr5:93051000-93051800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:93051000-93052000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:93051000-93052800	Enhancers	HepG2	liver
12	chr5:93051000-93053200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:93051000-93053400	Enhancers	Fetal Intestine Large	intestine
14	chr5:93051200-93053000	Enhancers	Duodenum Mucosa	Duodenum

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