Variant report

Variant	rs6886025
Chromosome Location	chr5:93098452-93098453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10041792	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10044641	0.85[EUR][1000 genomes]
rs10050364	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10051878	0.88[ASN][1000 genomes]
rs10057118	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057664	0.87[EUR][1000 genomes]
rs10060331	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061069	0.85[EUR][1000 genomes]
rs10064158	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10067541	0.86[ASN][1000 genomes]
rs10067754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10070350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10071040	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10071805	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10076965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1026279	0.82[EUR][1000 genomes]
rs1038686	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10476520	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10476588	0.84[EUR][1000 genomes]
rs11135397	0.81[EUR][1000 genomes]
rs12054831	0.80[EUR][1000 genomes]
rs12153021	0.81[ASN][1000 genomes]
rs12332731	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12653528	0.81[EUR][1000 genomes]
rs13154000	0.88[ASN][1000 genomes]
rs13154650	0.88[ASN][1000 genomes]
rs13165221	0.83[EUR][1000 genomes]
rs13165400	0.88[ASN][1000 genomes]
rs13167027	0.85[EUR][1000 genomes]
rs13178857	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13181456	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13184801	0.83[EUR][1000 genomes]
rs1349711	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1453003	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs167570	0.88[ASN][1000 genomes]
rs17083297	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17083377	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17312456	0.88[ASN][1000 genomes]
rs17372057	0.88[ASN][1000 genomes]
rs1901736	0.86[EUR][1000 genomes]
rs1965712	0.82[ASN][1000 genomes]
rs1965713	0.82[ASN][1000 genomes]
rs1982439	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2043979	0.82[EUR][1000 genomes]
rs2045019	0.87[EUR][1000 genomes]
rs2084916	0.87[EUR][1000 genomes]
rs28526002	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28534784	0.88[ASN][1000 genomes]
rs28594545	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2924374	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35107028	0.88[ASN][1000 genomes]
rs35372313	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35791029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35878747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6556833	0.83[EUR][1000 genomes]
rs6556834	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6556839	0.84[EUR][1000 genomes]
rs68122392	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6868067	0.86[ASN][1000 genomes]
rs6877616	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879620	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6881815	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6885725	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6890998	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6892055	0.82[ASN][1000 genomes]
rs6895356	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6898507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72786644	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72786647	0.88[ASN][1000 genomes]
rs7701114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7702348	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7702649	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7713956	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7717718	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7729807	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7736892	0.86[EUR][1000 genomes]
rs890738	0.86[EUR][1000 genomes]
rs9314086	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9314087	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
2	chr5:93070400-93108200	Weak transcription	Liver	Liver
3	chr5:93075400-93108400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:93075800-93108200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93076800-93108200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:93077000-93108400	Weak transcription	Ovary	ovary
7	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
8	chr5:93077400-93111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:93082800-93108400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:93087600-93108400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
12	chr5:93092400-93104400	Weak transcription	Left Ventricle	heart
13	chr5:93092400-93112000	Weak transcription	Psoas Muscle	Psoas
14	chr5:93094800-93111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:93096000-93108200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr5:93096400-93113600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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