Variant report

Variant	rs13181456
Chromosome Location	chr5:93079924-93079925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10041792	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10044641	0.89[EUR][1000 genomes]
rs10050364	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10051878	0.91[ASN][1000 genomes]
rs10057118	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10057664	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10060331	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10061069	0.90[EUR][1000 genomes]
rs10064158	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10067541	0.89[ASN][1000 genomes]
rs10067754	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10070350	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10071040	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071805	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10076965	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1026279	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1038686	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10476520	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476588	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11135397	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12054831	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12153021	0.84[ASN][1000 genomes]
rs12332731	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653528	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13154000	0.91[ASN][1000 genomes]
rs13154650	0.91[ASN][1000 genomes]
rs13165221	0.86[EUR][1000 genomes]
rs13165400	0.91[ASN][1000 genomes]
rs13167027	0.90[EUR][1000 genomes]
rs13178857	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13184801	0.86[EUR][1000 genomes]
rs1349711	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1453003	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs167570	0.91[ASN][1000 genomes]
rs17083297	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17083377	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17312456	0.91[ASN][1000 genomes]
rs17372057	0.91[ASN][1000 genomes]
rs1901736	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1982439	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2043979	0.87[EUR][1000 genomes]
rs2045019	0.88[EUR][1000 genomes]
rs2045020	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2084916	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28526002	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28534784	0.91[ASN][1000 genomes]
rs28594545	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2924374	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35107028	0.91[ASN][1000 genomes]
rs35372313	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35791029	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35878747	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6556833	0.88[EUR][1000 genomes]
rs6556834	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6556839	0.85[EUR][1000 genomes]
rs68122392	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6868067	0.89[ASN][1000 genomes]
rs6877616	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6879620	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6881815	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6885725	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6886025	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890998	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892055	0.85[ASN][1000 genomes]
rs6895356	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898507	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72786644	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72786647	0.91[ASN][1000 genomes]
rs7701114	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7702348	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7702649	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7713956	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7717718	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7729807	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736892	0.87[EUR][1000 genomes]
rs890738	0.88[EUR][1000 genomes]
rs896729	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9314086	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314087	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
2	chr5:93057400-93080600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:93066000-93087400	Weak transcription	Dnd41	blood
4	chr5:93066400-93083400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:93070000-93080400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
7	chr5:93070400-93080400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:93070400-93087400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:93070400-93108200	Weak transcription	Liver	Liver
10	chr5:93071600-93082400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:93071800-93082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:93072000-93082200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:93072800-93096000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:93073600-93091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:93074000-93087000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:93074600-93082600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:93075000-93080400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:93075400-93108400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:93075600-93082600	Weak transcription	NHLF	lung
20	chr5:93075800-93108200	Weak transcription	Primary B cells from cord blood	blood
21	chr5:93076400-93083000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr5:93076800-93084200	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:93076800-93108200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:93077000-93081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:93077000-93087200	Weak transcription	Adipose Nuclei	Adipose
26	chr5:93077000-93087600	Weak transcription	Pancreas	Pancrea
27	chr5:93077000-93090000	Weak transcription	Gastric	stomach
28	chr5:93077000-93091000	Weak transcription	Right Ventricle	heart
29	chr5:93077000-93108400	Weak transcription	Ovary	ovary
30	chr5:93077200-93087600	Weak transcription	Lung	lung
31	chr5:93077200-93091200	Weak transcription	Left Ventricle	heart
32	chr5:93077200-93093400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:93077200-93094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:93077200-93095000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
36	chr5:93077400-93082400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:93077400-93082400	Weak transcription	Fetal Intestine Small	intestine
38	chr5:93077400-93093000	Weak transcription	Fetal Stomach	stomach
39	chr5:93077400-93095200	Weak transcription	Primary T cells from cord blood	blood
40	chr5:93077400-93111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:93077600-93080200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:93077600-93093600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr5:93078600-93082200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:93078600-93082400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:93078600-93084600	Weak transcription	GM12878-XiMat	blood
46	chr5:93078800-93082400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:93079000-93090000	Weak transcription	Esophagus	oesophagus
48	chr5:93079000-93095200	Weak transcription	Primary B cells from peripheral blood	blood

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