Variant report

Variant	rs13154650
Chromosome Location	chr5:93052205-93052206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 167 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs10036024	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10036829	0.88[ASN][1000 genomes]
rs10036891	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10038424	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10038828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10038831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10041792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10045836	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10050364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10051878	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052662	0.85[ASN][1000 genomes]
rs10053405	0.88[ASN][1000 genomes]
rs10054790	0.85[ASN][1000 genomes]
rs10054903	0.88[ASN][1000 genomes]
rs10055340	0.88[ASN][1000 genomes]
rs10055741	0.83[ASN][1000 genomes]
rs10057118	0.88[ASN][1000 genomes]
rs10057130	0.88[ASN][1000 genomes]
rs10057664	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10058331	0.85[ASN][1000 genomes]
rs10060331	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10061377	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10064158	0.97[ASN][1000 genomes]
rs10064368	0.80[ASN][1000 genomes]
rs10066431	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10067541	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10067754	0.97[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10071040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10071805	0.91[ASN][1000 genomes]
rs10075217	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10076052	0.88[ASN][1000 genomes]
rs10076965	0.97[ASN][1000 genomes]
rs10078941	0.85[ASN][1000 genomes]
rs10079708	0.85[ASN][1000 genomes]
rs10214278	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1026279	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1031424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1038686	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1046217	0.86[JPT][hapmap]
rs10476520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10476522	0.88[ASN][1000 genomes]
rs10476588	0.85[ASN][1000 genomes]
rs10476590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10514376	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs11135397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12054831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12153021	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12188163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[ASN][1000 genomes]
rs12332731	0.97[ASN][1000 genomes]
rs12653528	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12716453	0.85[ASN][1000 genomes]
rs12716454	0.85[ASN][1000 genomes]
rs13153987	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154000	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13156202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161885	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13164315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13165400	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169675	0.82[ASN][1000 genomes]
rs13171131	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[ASN][1000 genomes]
rs13173952	0.85[ASN][1000 genomes]
rs13177800	0.88[ASN][1000 genomes]
rs13178857	0.94[ASN][1000 genomes]
rs13181456	0.91[ASN][1000 genomes]
rs13182631	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185660	0.85[ASN][1000 genomes]
rs13357713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13361613	0.85[ASN][1000 genomes]
rs1349711	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1453003	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1470150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs167570	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083278	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17083297	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17083311	1.00[YRI][hapmap]
rs17083377	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17312456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17314074	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17314762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[ASN][1000 genomes]
rs17314797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17314825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[ASN][1000 genomes]
rs17372057	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372615	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17374166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[ASN][1000 genomes]
rs1844343	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1901736	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1965712	0.82[ASN][1000 genomes]
rs1965713	0.82[ASN][1000 genomes]
rs1982439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2045019	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2045020	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2045021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2084916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28412976	0.85[ASN][1000 genomes]
rs28418572	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28526002	0.97[ASN][1000 genomes]
rs28534784	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28594545	0.97[ASN][1000 genomes]
rs28610997	0.85[ASN][1000 genomes]
rs2924374	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34592268	0.85[ASN][1000 genomes]
rs34621188	0.88[ASN][1000 genomes]
rs34891708	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34967135	0.88[ASN][1000 genomes]
rs35107028	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35372313	0.97[ASN][1000 genomes]
rs35426871	0.82[ASN][1000 genomes]
rs35496867	0.88[ASN][1000 genomes]
rs35747258	0.88[ASN][1000 genomes]
rs35791029	0.97[ASN][1000 genomes]
rs35878747	0.97[ASN][1000 genomes]
rs36042718	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3776601	0.86[JPT][hapmap]
rs55724660	0.88[ASN][1000 genomes]
rs55947981	0.88[ASN][1000 genomes]
rs56108532	0.88[ASN][1000 genomes]
rs6556829	0.86[JPT][hapmap]
rs6556834	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6556838	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6556839	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs66564678	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67328989	0.85[ASN][1000 genomes]
rs67914792	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68122392	0.97[ASN][1000 genomes]
rs6859757	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6868067	0.91[ASN][1000 genomes]
rs6874766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6877030	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877616	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6879620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6881815	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6884138	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs6885725	0.81[ASN][1000 genomes]
rs6886025	0.88[ASN][1000 genomes]
rs6890998	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6892055	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6898507	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6898842	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786662	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72786702	0.85[ASN][1000 genomes]
rs7701011	0.88[ASN][1000 genomes]
rs7701114	0.97[ASN][1000 genomes]
rs7701314	0.85[ASN][1000 genomes]
rs7701974	0.88[ASN][1000 genomes]
rs7702348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7702649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7712388	0.86[JPT][hapmap]
rs7713956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7715562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[ASN][1000 genomes]
rs7717718	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7721168	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.88[ASN][1000 genomes]
rs7736620	0.88[ASN][1000 genomes]
rs7736624	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7736892	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs896729	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9314086	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9314092	0.82[ASN][1000 genomes]
rs9314093	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13154650	MAGOHB	trans	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93049200-93052800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:93050200-93053000	Weak transcription	HUVEC	blood vessel
7	chr5:93050400-93052400	Enhancers	Fetal Intestine Small	intestine
8	chr5:93051000-93052800	Enhancers	HepG2	liver
9	chr5:93051000-93053200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:93051000-93053400	Enhancers	Fetal Intestine Large	intestine
11	chr5:93051200-93053000	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:93051800-93052800	Weak transcription	Fetal Heart	heart
13	chr5:93052000-93057000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:93052200-93053200	Enhancers	A549	lung
15	chr5:93052200-93053400	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links