Variant report

Variant	rs6898507
Chromosome Location	chr5:93082343-93082344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:93082168-93082707	MCF10A-Er-Src	breast:	n/a	chr5:93082569-93082577
2	YY1	chr5:93082104-93082816	SK-N-SH	brain:	n/a	chr5:93082384-93082394 chr5:93082760-93082770 chr5:93082246-93082268 chr5:93082258-93082268
3	FOS	chr5:93082261-93082674	MCF10A-Er-Src	breast:	n/a	chr5:93082569-93082577
4	FOSL2	chr5:93082214-93082876	SK-N-SH	brain:	n/a	chr5:93082569-93082577
5	PBX3	chr5:93082226-93082912	SK-N-SH	brain:	n/a	n/a
6	GATA3	chr5:93082005-93082963	SK-N-SH	brain:	n/a	chr5:93082043-93082064 chr5:93082924-93082941 chr5:93082050-93082061
7	JUND	chr5:93082220-93082888	SK-N-SH	brain:	n/a	chr5:93082569-93082577
8	FOS	chr5:93082211-93082598	MCF10A-Er-Src	breast:	n/a	chr5:93082569-93082577
9	CEBPB	chr5:93082170-93082427	Hela-S3	cervix:	n/a	chr5:93082393-93082404
10	CEBPB	chr5:93082171-93082371	HepG2	liver:	n/a	n/a
11	CEBPB	chr5:93082146-93082478	IMR90	lung:	n/a	chr5:93082393-93082404
12	TCF12	chr5:93082189-93082926	SK-N-SH	brain:	n/a	n/a
13	GATA3	chr5:93081980-93082990	SK-N-SH	brain:	n/a	chr5:93082043-93082064 chr5:93082924-93082941 chr5:93082050-93082061
14	CEBPB	chr5:93082162-93082496	A549	lung:	n/a	chr5:93082393-93082404

Variant related genes	Relation type
POU5F2	TF binding region

Extended variants
information (count: 182 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs10036829	0.85[ASN][1000 genomes]
rs10038424	0.85[ASN][1000 genomes]
rs10038828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10038831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10041792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044641	0.87[EUR][1000 genomes]
rs10045836	0.85[ASN][1000 genomes]
rs10050364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050465	0.82[ASN][1000 genomes]
rs10051878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10052662	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10053405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10054790	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10054903	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs10055340	0.85[ASN][1000 genomes]
rs10055741	0.80[ASN][1000 genomes]
rs10056879	1.00[JPT][hapmap]
rs10057118	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057130	0.85[ASN][1000 genomes]
rs10057664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10058331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10060331	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061069	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs10061377	0.85[ASN][1000 genomes]
rs10062711	0.82[ASN][1000 genomes]
rs10064158	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064368	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10066431	0.85[ASN][1000 genomes]
rs10066791	0.82[ASN][1000 genomes]
rs10067541	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10067754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071805	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10075217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10076052	0.85[ASN][1000 genomes]
rs10076192	0.82[ASN][1000 genomes]
rs10076965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078941	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10079708	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10214278	0.86[JPT][hapmap]
rs1026279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1031424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1038686	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1046217	0.86[JPT][hapmap]
rs10476520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476522	0.85[ASN][1000 genomes]
rs10476588	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476590	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10514376	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs11135394	0.89[CEU][hapmap];0.90[TSI][hapmap]
rs11135397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12054831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153021	0.91[ASN][1000 genomes]
rs12188163	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12332731	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653528	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12716453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12716454	0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs13153987	0.85[ASN][1000 genomes]
rs13154000	0.97[ASN][1000 genomes]
rs13154650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13155452	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13156202	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13161885	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs13164315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13165221	0.85[EUR][1000 genomes]
rs13165400	0.97[ASN][1000 genomes]
rs13167027	0.89[CEU][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs13171131	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13173952	0.83[ASN][1000 genomes]
rs13177800	0.85[ASN][1000 genomes]
rs13178857	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181456	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13182631	0.85[ASN][1000 genomes]
rs13184801	0.85[EUR][1000 genomes]
rs13185660	0.82[ASN][1000 genomes]
rs13357713	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13361613	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1349711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1372037	0.87[YRI][hapmap]
rs1453003	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1470150	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs167570	0.97[ASN][1000 genomes]
rs17083278	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17083297	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17083337	0.83[YRI][hapmap]
rs17083377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17083380	0.89[CEU][hapmap];0.90[TSI][hapmap]
rs17312456	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17314762	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17314797	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs17314825	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs17372057	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs17372615	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17372649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17372725	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17374166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1844343	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1901736	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1965712	0.85[ASN][1000 genomes]
rs1965713	0.85[ASN][1000 genomes]
rs1982439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2043979	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2045019	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2045020	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2045021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2084916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2119449	0.83[YRI][hapmap]
rs2344918	0.83[YRI][hapmap]
rs28412976	0.83[ASN][1000 genomes]
rs28526002	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28534784	0.97[ASN][1000 genomes]
rs28594545	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610997	0.83[ASN][1000 genomes]
rs2924374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34592268	0.83[ASN][1000 genomes]
rs34621188	0.85[ASN][1000 genomes]
rs34891708	0.85[ASN][1000 genomes]
rs34967135	0.85[ASN][1000 genomes]
rs35107028	0.97[ASN][1000 genomes]
rs35372313	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35496867	0.85[ASN][1000 genomes]
rs35747258	0.85[ASN][1000 genomes]
rs35791029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35878747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36042718	0.85[ASN][1000 genomes]
rs3776601	0.86[JPT][hapmap]
rs55724660	0.85[ASN][1000 genomes]
rs55947981	0.85[ASN][1000 genomes]
rs56108532	0.85[ASN][1000 genomes]
rs6556829	0.86[JPT][hapmap]
rs6556833	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs6556834	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6556838	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6556839	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs66564678	0.85[ASN][1000 genomes]
rs67328989	0.83[ASN][1000 genomes]
rs68122392	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859757	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6868067	0.94[ASN][1000 genomes]
rs6874766	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6877030	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6877616	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.85[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6881815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6884138	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs6885725	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6886025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6890998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892055	0.91[ASN][1000 genomes]
rs6895356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898842	0.85[ASN][1000 genomes]
rs72786644	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72786647	0.97[ASN][1000 genomes]
rs72786702	0.83[ASN][1000 genomes]
rs7701011	0.85[ASN][1000 genomes]
rs7701114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701314	0.83[ASN][1000 genomes]
rs7701974	0.85[ASN][1000 genomes]
rs7702348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7702649	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712388	0.86[JPT][hapmap]
rs7713956	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7715562	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7717718	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7721168	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7723944	0.83[YRI][hapmap]
rs7729237	0.83[YRI][hapmap]
rs7729807	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7730993	0.87[YRI][hapmap]
rs7734897	0.85[ASN][1000 genomes]
rs7735009	0.83[CEU][hapmap]
rs7736620	0.85[ASN][1000 genomes]
rs7736624	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7736892	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs890738	0.89[EUR][1000 genomes]
rs896729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9314086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314087	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9314093	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
2	chr5:93066000-93087400	Weak transcription	Dnd41	blood
3	chr5:93066400-93083400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
5	chr5:93070400-93087400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:93070400-93108200	Weak transcription	Liver	Liver
7	chr5:93071600-93082400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:93071800-93082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:93072800-93096000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:93073600-93091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:93074000-93087000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:93074600-93082600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:93075400-93108400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:93075600-93082600	Weak transcription	NHLF	lung
15	chr5:93075800-93108200	Weak transcription	Primary B cells from cord blood	blood
16	chr5:93076400-93083000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:93076800-93084200	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:93076800-93108200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:93077000-93087200	Weak transcription	Adipose Nuclei	Adipose
20	chr5:93077000-93087600	Weak transcription	Pancreas	Pancrea
21	chr5:93077000-93090000	Weak transcription	Gastric	stomach
22	chr5:93077000-93091000	Weak transcription	Right Ventricle	heart
23	chr5:93077000-93108400	Weak transcription	Ovary	ovary
24	chr5:93077200-93087600	Weak transcription	Lung	lung
25	chr5:93077200-93091200	Weak transcription	Left Ventricle	heart
26	chr5:93077200-93093400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:93077200-93094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:93077200-93095000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
30	chr5:93077400-93082400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:93077400-93082400	Weak transcription	Fetal Intestine Small	intestine
32	chr5:93077400-93093000	Weak transcription	Fetal Stomach	stomach
33	chr5:93077400-93095200	Weak transcription	Primary T cells from cord blood	blood
34	chr5:93077400-93111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:93077600-93093600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr5:93078600-93082400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:93078600-93084600	Weak transcription	GM12878-XiMat	blood
38	chr5:93078800-93082400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:93079000-93090000	Weak transcription	Esophagus	oesophagus
40	chr5:93079000-93095200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr5:93081200-93083400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:93081600-93083000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:93081800-93082800	Enhancers	NHDF-Ad	bronchial
44	chr5:93082000-93083000	Enhancers	Osteobl	bone
45	chr5:93082200-93082800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:93082200-93083200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:93082200-93083400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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