Variant report

Variant	rs7735009
Chromosome Location	chr5:93260865-93260866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93259705..93262376-chr5:93294800..93297613,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10044641	0.82[ASN][1000 genomes]
rs10050364	0.84[CEU][hapmap]
rs10057664	0.83[CEU][hapmap]
rs10061069	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1026279	0.83[CEU][hapmap]
rs1031423	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866760	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11135394	0.94[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11135397	0.83[CEU][hapmap]
rs11135401	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11948511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12054831	0.84[CEU][hapmap]
rs12653528	0.83[CEU][hapmap]
rs13167027	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs13186432	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1349711	0.83[CEU][hapmap]
rs1453003	0.83[CEU][hapmap]
rs17083377	0.83[CEU][hapmap]
rs17083380	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1901736	0.83[CEU][hapmap]
rs1982439	0.84[CEU][hapmap]
rs2043979	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs2045019	0.83[CEU][hapmap]
rs2045020	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2045021	0.84[CEU][hapmap]
rs2084916	0.84[CEU][hapmap]
rs2924374	0.83[CEU][hapmap]
rs35672980	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60375544	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6556833	0.95[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6556834	0.83[CEU][hapmap]
rs6556838	0.83[CEU][hapmap]
rs6556839	0.83[CEU][hapmap]
rs6869110	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6879620	0.84[CEU][hapmap]
rs6881815	0.83[CEU][hapmap]
rs6898507	0.83[CEU][hapmap]
rs7702348	0.84[CEU][hapmap]
rs7702649	0.83[CEU][hapmap]
rs7708175	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs7713956	0.83[CEU][hapmap]
rs7721668	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727923	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7728825	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7732578	0.94[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7733142	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7736892	0.84[CEU][hapmap]
rs890738	0.84[ASN][1000 genomes]
rs896729	0.83[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1028893	chr5:93213264-93276883	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020849	chr5:93228065-93279216	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1030870	chr5:93242611-93282996	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv980573	chr5:93255694-93260934	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93226800-93269600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:93228000-93266600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:93249600-93261000	Weak transcription	NHDF-Ad	bronchial
5	chr5:93250000-93262200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:93250200-93273800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:93252200-93284400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:93253200-93263200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr5:93257000-93270200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:93257200-93287400	Weak transcription	Primary B cells from cord blood	blood
11	chr5:93259800-93263200	Enhancers	NHEK	skin
12	chr5:93260000-93261200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:93260000-93261400	Enhancers	HSMM	muscle
14	chr5:93260000-93261800	Enhancers	HMEC	breast
15	chr5:93260000-93263200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:93260000-93263400	Enhancers	HSMMtube	muscle
17	chr5:93260200-93261600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:93260400-93261400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:93260400-93261400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:93260800-93261800	Enhancers	HUVEC	blood vessel

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