Variant report

Variant	rs6869110
Chromosome Location	chr5:93355531-93355532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10061069	0.84[ASN][1000 genomes]
rs1031423	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10866760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11135394	0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs11135401	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948511	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13165221	0.81[ASN][1000 genomes]
rs13167027	0.84[ASN][1000 genomes]
rs13184801	0.81[ASN][1000 genomes]
rs13186432	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083380	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2043979	0.82[ASN][1000 genomes]
rs35672980	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60375544	0.83[EUR][1000 genomes]
rs6556833	0.81[ASN][1000 genomes]
rs6860390	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs7708175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721668	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7727923	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7728825	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7732578	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7733142	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7735009	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs890738	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93327000-93394600	Weak transcription	Small Intestine	intestine
2	chr5:93329200-93357000	Weak transcription	HSMM	muscle
3	chr5:93331600-93357200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:93341200-93357400	Weak transcription	Fetal Stomach	stomach
5	chr5:93345000-93395200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:93346600-93356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:93346600-93365800	Weak transcription	Left Ventricle	heart
8	chr5:93346600-93376400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:93347000-93356800	Weak transcription	NHDF-Ad	bronchial
10	chr5:93347000-93357000	Weak transcription	Pancreas	Pancrea
11	chr5:93347000-93357200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:93347000-93380000	Weak transcription	Thymus	Thymus
13	chr5:93347400-93357200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:93348400-93399000	Weak transcription	Esophagus	oesophagus
15	chr5:93348600-93356800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:93348600-93361600	Weak transcription	Gastric	stomach
17	chr5:93348800-93356600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:93348800-93360600	Weak transcription	Brain Angular Gyrus	brain
19	chr5:93348800-93367600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:93348800-93394000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:93349000-93356400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:93349200-93356400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:93349200-93356800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr5:93349200-93375000	Weak transcription	Placenta	Placenta
25	chr5:93349200-93386200	Weak transcription	Spleen	Spleen
26	chr5:93350000-93357000	Weak transcription	Aorta	Aorta
27	chr5:93350000-93357000	Weak transcription	Lung	lung
28	chr5:93350400-93357400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:93351000-93394400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:93351200-93363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:93351800-93384200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:93352000-93355600	Weak transcription	Dnd41	blood
33	chr5:93352000-93357000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:93352000-93357000	Weak transcription	Fetal Intestine Large	intestine
35	chr5:93352400-93367800	Weak transcription	Brain Germinal Matrix	brain
36	chr5:93353200-93357000	Weak transcription	Liver	Liver
37	chr5:93353400-93394600	Weak transcription	Fetal Kidney	kidney
38	chr5:93353800-93357200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr5:93353800-93357600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:93354000-93356200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:93354000-93356400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr5:93354000-93357000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:93354000-93357000	Weak transcription	Ovary	ovary
44	chr5:93354200-93356400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:93354200-93357000	Weak transcription	Osteobl	bone
46	chr5:93354200-93357200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr5:93354200-93357200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:93354200-93359800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr5:93354200-93364600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr5:93354200-93367200	Weak transcription	Adipose Nuclei	Adipose

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