Variant report

Variant	rs13186432
Chromosome Location	chr5:93336940-93336941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10061069	0.87[ASN][1000 genomes]
rs1031423	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10866760	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135394	0.85[ASN][1000 genomes]
rs11135401	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11948511	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13165221	0.84[ASN][1000 genomes]
rs13167027	0.87[ASN][1000 genomes]
rs13184801	0.84[ASN][1000 genomes]
rs17083380	0.85[ASN][1000 genomes]
rs2043979	0.85[ASN][1000 genomes]
rs2045020	0.81[EUR][1000 genomes]
rs35672980	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60375544	0.85[EUR][1000 genomes]
rs6556833	0.83[ASN][1000 genomes]
rs6860390	0.81[AMR][1000 genomes]
rs6869110	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7708175	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7721668	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727923	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7728825	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7732578	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7733142	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7735009	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs890738	0.88[ASN][1000 genomes]
rs896729	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
2	chr5:93314600-93337200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:93325400-93337200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:93327000-93394600	Weak transcription	Small Intestine	intestine
5	chr5:93327600-93337600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:93329200-93357000	Weak transcription	HSMM	muscle
7	chr5:93331000-93353000	Weak transcription	Fetal Thymus	thymus
8	chr5:93331400-93347000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:93331600-93357200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:93335200-93348200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:93335800-93338800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:93336800-93338200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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