Variant report

Variant	rs35672980
Chromosome Location	chr5:93284877-93284878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10044641	0.85[ASN][1000 genomes]
rs10061069	0.86[ASN][1000 genomes]
rs1031423	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10866760	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11135394	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11135401	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11948511	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13165221	0.81[ASN][1000 genomes]
rs13167027	0.86[ASN][1000 genomes]
rs13184801	0.81[ASN][1000 genomes]
rs13186432	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17083380	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2043979	0.92[ASN][1000 genomes]
rs60375544	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6556833	0.82[ASN][1000 genomes]
rs6869110	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7708175	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7721668	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727923	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7728825	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7732578	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7733142	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7735009	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs890738	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93257200-93287400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:93263200-93289200	Weak transcription	Ovary	ovary
4	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:93263400-93303800	Weak transcription	HSMMtube	muscle
6	chr5:93268800-93289800	Weak transcription	Fetal Intestine Large	intestine
7	chr5:93270600-93289000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:93270600-93289800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:93272400-93289400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:93277000-93289200	Weak transcription	Aorta	Aorta
11	chr5:93277800-93290000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:93278000-93304800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:93279400-93289200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:93279400-93292000	Weak transcription	Right Ventricle	heart
15	chr5:93281600-93300200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:93282000-93289000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:93282000-93291400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:93282200-93309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:93282400-93286600	Weak transcription	HUVEC	blood vessel
20	chr5:93282600-93294000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:93282800-93285600	Weak transcription	Fetal Lung	lung
22	chr5:93282800-93312000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:93283000-93289000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr5:93283000-93289800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:93283000-93290000	Weak transcription	Dnd41	blood
26	chr5:93283000-93299000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr5:93284400-93292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:93284400-93300200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:93284600-93286400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:93284600-93297600	Weak transcription	Fetal Thymus	thymus
31	chr5:93284800-93288600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr5:93284800-93288800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr5:93284800-93289000	Weak transcription	Fetal Stomach	stomach
34	chr5:93284800-93292400	Weak transcription	Thymus	Thymus
35	chr5:93284800-93306400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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