Variant report

Variant	rs10061069
Chromosome Location	chr5:93071630-93071631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10041792	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs10044641	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10050364	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10057118	0.85[EUR][1000 genomes]
rs10057664	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10060331	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs10064158	0.88[EUR][1000 genomes]
rs10067754	0.88[EUR][1000 genomes]
rs10070350	0.89[EUR][1000 genomes]
rs10071040	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs10076965	0.88[EUR][1000 genomes]
rs1026279	0.89[CEU][hapmap]
rs1031423	0.87[ASN][1000 genomes]
rs10476520	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10866760	0.87[ASN][1000 genomes]
rs11135394	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11135397	0.89[CEU][hapmap]
rs11948511	0.87[ASN][1000 genomes]
rs12054831	0.90[CEU][hapmap]
rs12332731	0.85[EUR][1000 genomes]
rs12653528	0.89[CEU][hapmap]
rs13165221	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13167027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181456	0.90[EUR][1000 genomes]
rs13184801	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186432	0.87[ASN][1000 genomes]
rs1349711	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs1453003	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs17083377	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs17083380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1901736	0.89[CEU][hapmap]
rs1982439	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2043979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2045019	0.89[CEU][hapmap]
rs2045020	0.89[CEU][hapmap]
rs2045021	0.90[CEU][hapmap]
rs2084916	0.89[CEU][hapmap]
rs2344451	0.82[EUR][1000 genomes]
rs28526002	0.89[EUR][1000 genomes]
rs28594545	0.89[EUR][1000 genomes]
rs2924374	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs35372313	0.87[EUR][1000 genomes]
rs35672980	0.86[ASN][1000 genomes]
rs35791029	0.88[EUR][1000 genomes]
rs35878747	0.87[EUR][1000 genomes]
rs6556833	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6556834	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6556838	0.89[CEU][hapmap]
rs6556839	0.89[CEU][hapmap]
rs68122392	0.88[EUR][1000 genomes]
rs6869110	0.84[ASN][1000 genomes]
rs6877616	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs6879620	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6881815	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs6885725	0.85[EUR][1000 genomes]
rs6886025	0.85[EUR][1000 genomes]
rs6890998	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs6895356	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6898507	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs72786644	0.83[EUR][1000 genomes]
rs7701114	0.87[EUR][1000 genomes]
rs7702348	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7702649	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7713956	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7721668	0.84[ASN][1000 genomes]
rs7727923	0.82[ASN][1000 genomes]
rs7729807	0.89[EUR][1000 genomes]
rs7733142	0.87[ASN][1000 genomes]
rs7735009	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7736892	0.90[CEU][hapmap]
rs890738	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs896729	0.89[CEU][hapmap]
rs9314086	0.89[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93057400-93080600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:93060800-93076200	Weak transcription	Left Ventricle	heart
7	chr5:93065200-93075000	Weak transcription	Psoas Muscle	Psoas
8	chr5:93065200-93078400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:93066000-93087400	Weak transcription	Dnd41	blood
10	chr5:93066400-93076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:93066400-93083400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:93067600-93072200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:93067800-93073400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:93068000-93075200	Weak transcription	Fetal Lung	lung
15	chr5:93068000-93076200	Weak transcription	Fetal Intestine Small	intestine
16	chr5:93068000-93076400	Weak transcription	Pancreas	Pancrea
17	chr5:93068200-93078000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:93069800-93073200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:93069800-93074400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:93069800-93076200	Weak transcription	Gastric	stomach
21	chr5:93069800-93076400	Weak transcription	Adipose Nuclei	Adipose
22	chr5:93070000-93080400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
24	chr5:93070400-93080400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:93070400-93087400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr5:93070400-93108200	Weak transcription	Liver	Liver
27	chr5:93070800-93071800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr5:93070800-93072000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:93071000-93071800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:93071000-93071800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:93071000-93071800	Strong transcription	Primary T cells from cord blood	blood
32	chr5:93071000-93071800	Enhancers	Osteobl	bone
33	chr5:93071200-93072000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:93071400-93071800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr5:93071600-93073400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr5:93071600-93082400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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